From 49a63dec52f440b65cde9172831e2e6402b24398 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Kirill=20M=C3=BCller?= Date: Sat, 19 Oct 2024 18:38:14 +0200 Subject: [PATCH] chore: Revdepcheck results --- revdep/README.md | 8 +---- revdep/cran.md | 14 ++------ revdep/failures.md | 42 ++++++++++++------------ revdep/problems.md | 82 +--------------------------------------------- 4 files changed, 26 insertions(+), 120 deletions(-) diff --git a/revdep/README.md b/revdep/README.md index 8da62ac3d..5377f304a 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -4,11 +4,5 @@ |package |version |error |warning |note | |:----------|:-------|:-----|:-------|:----| -|incidence2 |1.2.3 |1 | | | - -## New problems (1) - -|package |version |error |warning |note | -|:-------|:-------|:------|:-------|:----| -|[prt](problems.md#prt)|0.1.5 |__+2__ |__+1__ | | +|tidyseurat |0.8.0 |1 | | | diff --git a/revdep/cran.md b/revdep/cran.md index f9b3f6301..95a78e658 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,20 +1,12 @@ ## revdepcheck results -We checked 100 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. +We checked 122 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. - * We saw 1 new problems + * We saw 0 new problems * We failed to check 1 packages Issues with CRAN packages are summarised below. -### New problems -(This reports the first line of each new failure) - -* prt - checking examples ... ERROR - checking tests ... ERROR - checking re-building of vignette outputs ... WARNING - ### Failed to check -* incidence2 (NA) +* tidyseurat (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 4097552ba..a49456a4a 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1,23 +1,23 @@ -# incidence2 +# tidyseurat
-* Version: 1.2.3 -* GitHub: https://github.com/reconverse/incidence2 -* Source code: https://github.com/cran/incidence2 -* Date/Publication: 2021-11-07 22:00:02 UTC -* Number of recursive dependencies: 87 +* Version: 0.8.0 +* GitHub: https://github.com/stemangiola/tidyseurat +* Source code: https://github.com/cran/tidyseurat +* Date/Publication: 2024-01-10 04:50:02 UTC +* Number of recursive dependencies: 195 -Run `revdepcheck::cloud_details(, "incidence2")` for more info +Run `revdepcheck::cloud_details(, "tidyseurat")` for more info
## In both -* checking whether package ‘incidence2’ can be installed ... ERROR +* checking whether package ‘tidyseurat’ can be installed ... ERROR ``` Installation failed. - See ‘/tmp/workdir/incidence2/new/incidence2.Rcheck/00install.out’ for details. + See ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/00install.out’ for details. ``` ## Installation @@ -25,38 +25,38 @@ Run `revdepcheck::cloud_details(, "incidence2")` for more info ### Devel ``` -* installing *source* package ‘incidence2’ ... -** package ‘incidence2’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error : The `x` argument of `as_tibble()` can't be missing as of tibble 3.0.0. -Error: unable to load R code in package ‘incidence2’ +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required Execution halted -ERROR: lazy loading failed for package ‘incidence2’ -* removing ‘/tmp/workdir/incidence2/new/incidence2.Rcheck/incidence2’ +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/new/tidyseurat.Rcheck/tidyseurat’ ``` ### CRAN ``` -* installing *source* package ‘incidence2’ ... -** package ‘incidence2’ successfully unpacked and MD5 sums checked +* installing *source* package ‘tidyseurat’ ... +** package ‘tidyseurat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading -Error : The `x` argument of `as_tibble()` can't be missing as of tibble 3.0.0. -Error: unable to load R code in package ‘incidence2’ +Error: package or namespace load failed for ‘SeuratObject’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): + namespace ‘Matrix’ 1.5-4.1 is already loaded, but >= 1.6.4 is required Execution halted -ERROR: lazy loading failed for package ‘incidence2’ -* removing ‘/tmp/workdir/incidence2/old/incidence2.Rcheck/incidence2’ +ERROR: lazy loading failed for package ‘tidyseurat’ +* removing ‘/tmp/workdir/tidyseurat/old/tidyseurat.Rcheck/tidyseurat’ ``` diff --git a/revdep/problems.md b/revdep/problems.md index db8ee8a0a..9a2073633 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,81 +1 @@ -# prt - -
- -* Version: 0.1.5 -* GitHub: https://github.com/nbenn/prt -* Source code: https://github.com/cran/prt -* Date/Publication: 2022-07-18 09:40:02 UTC -* Number of recursive dependencies: 67 - -Run `revdepcheck::cloud_details(, "prt")` for more info - -
- -## Newly broken - -* checking examples ... ERROR - ``` - Running examples in ‘prt-Ex.R’ failed - The error most likely occurred in: - - > ### Name: print.prt - > ### Title: Printing prt - > ### Aliases: print.prt format.prt trunc_dt - > - > ### ** Examples - > - > cars <- as_prt(mtcars) - ... - 9. ├─base::format(x, ..., n = n, width = width, max_extra_cols = max_extra_cols) - 10. └─prt:::format.prt(x, ..., n = n, width = width, max_extra_cols = max_extra_cols) - 11. ├─base::format(trunc_dt(x, n = n, width = width, max_extra_cols = max_extra_cols)) - 12. └─prt::trunc_dt(x, n = n, width = width, max_extra_cols = max_extra_cols) - 13. └─prt:::shrink_dt(df, rows) - 14. └─pillar::colonnade(df, has_row_id = FALSE) - 15. └─lifecycle::deprecate_stop("1.9.0", "pillar::colonnade()", "pillar::tbl_format_setup()") - 16. └─lifecycle:::deprecate_stop0(msg) - 17. └─rlang::cnd_signal(...) - Execution halted - ``` - -* checking tests ... ERROR - ``` - Running ‘testthat.R’ - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - 16. │ │ └─base::is.factor(x) - 17. │ └─base::paste0(...) - 18. ├─base::format(x, ..., n = n, width = width, max_extra_cols = max_extra_cols) - 19. └─prt:::format.prt(x, ..., n = n, width = width, max_extra_cols = max_extra_cols) - 20. ├─base::format(trunc_dt(x, n = n, width = width, max_extra_cols = max_extra_cols)) - 21. └─prt::trunc_dt(x, n = n, width = width, max_extra_cols = max_extra_cols) - 22. └─prt:::shrink_dt(df, rows) - 23. └─pillar::colonnade(df, has_row_id = FALSE) - 24. └─lifecycle::deprecate_stop("1.9.0", "pillar::colonnade()", "pillar::tbl_format_setup()") - 25. └─lifecycle:::deprecate_stop0(msg) - 26. └─rlang::cnd_signal(...) - - [ FAIL 4 | WARN 0 | SKIP 0 | PASS 257 ] - Error: Test failures - Execution halted - ``` - -* checking re-building of vignette outputs ... WARNING - ``` - Error(s) in re-building vignettes: - ... - --- re-building ‘prt.Rmd’ using rmarkdown - Quitting from lines 35-37 (prt.Rmd) - Error: processing vignette 'prt.Rmd' failed with diagnostics: - `colonnade()` was deprecated in pillar 1.9.0 and is now defunct. - ℹ Please use `tbl_format_setup()` instead. - --- failed re-building ‘prt.Rmd’ - - SUMMARY: processing the following file failed: - ‘prt.Rmd’ - - Error: Vignette re-building failed. - Execution halted - ``` - +*Wow, no problems at all. :)* \ No newline at end of file