diff --git a/revdep/README.md b/revdep/README.md
index 827f9f6b..9330be0f 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -1,23 +1,38 @@
# Revdeps
-## Failed to check (9)
+## Failed to check (23)
-|package |version |error |warning |note |
-|:------------|:-------|:-----|:-------|:----|
-|CausalImpact |? | | | |
-|cbar |? | | | |
-|conos |1.4.5 |1 | | |
-|ctsem |3.6.0 |1 | | |
-|geocmeans |? | | | |
-|loon.ggplot |? | | | |
-|SSVS |? | | | |
-|valse |0.1-0 |1 | | |
-|vivid |? | | | |
+|package |version |error |warning |note |
+|:--------------|:-------|:-----|:-------|:----|
+|NA |? | | | |
+|NA |? | | | |
+|FAMetA |0.1.5 |1 | | |
+|NA |? | | | |
+|NA |? | | | |
+|genekitr |? | | | |
+|ggPMX |? | | | |
+|NA |? | | | |
+|grandR |? | | | |
+|lilikoi |? | | | |
+|MarketMatching |? | | | |
+|MARVEL |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|numbat |? | | | |
+|oHMMed |? | | | |
+|OlinkAnalyze |? | | | |
+|NA |? | | | |
+|NA |? | | | |
+|SCpubr |? | | | |
+|tidySEM |? | | | |
+|NA |? | | | |
+|NA |? | | | |
-## New problems (2)
+## New problems (3)
-|package |version |error |warning |note |
-|:------------------------------|:-------|:------|:-------|:----|
-|[dials](problems.md#dials) |0.1.0 |__+1__ | | |
-|[DriveML](problems.md#driveml) |0.1.4 | |__+1__ |1 |
+|package |version |error |warning |note |
+|:----------------------------------------|:-------|:------|:-------|:----|
+|[duke](problems.md#duke) |0.0.1 |__+1__ | | |
+|[ggside](problems.md#ggside) |0.2.2 |__+1__ | | |
+|[WoodSimulatR](problems.md#woodsimulatr) |0.6.0 |__+1__ |__+1__ | |
diff --git a/revdep/cran.md b/revdep/cran.md
index 7ed9f82c..befc1e92 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,29 +1,36 @@
## revdepcheck results
-We checked 4093 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
+We checked 904 reverse dependencies (893 from CRAN + 11 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 2 new problems
- * We failed to check 9 packages
+ * We saw 3 new problems
+ * We failed to check 12 packages
Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
-* dials
+* duke
checking tests ... ERROR
-* DriveML
+* ggside
+ checking tests ... ERROR
+
+* WoodSimulatR
+ checking examples ... ERROR
checking re-building of vignette outputs ... WARNING
### Failed to check
-* CausalImpact (NA)
-* cbar (NA)
-* conos (NA)
-* ctsem (NA)
-* geocmeans (NA)
-* loon.ggplot (NA)
-* SSVS (NA)
-* valse (NA)
-* vivid (NA)
+* FAMetA (NA)
+* genekitr (NA)
+* ggPMX (NA)
+* grandR (NA)
+* lilikoi (NA)
+* MarketMatching (NA)
+* MARVEL (NA)
+* numbat (NA)
+* oHMMed (NA)
+* OlinkAnalyze (NA)
+* SCpubr (NA)
+* tidySEM (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 75315db3..42ea4d01 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -1,14 +1,13 @@
-# CausalImpact
+# NA
-* Version: 1.2.7
+* Version: NA
* GitHub: NA
-* Source code: https://github.com/cran/CausalImpact
-* Date/Publication: 2021-06-07 06:40:02 UTC
-* Number of recursive dependencies: 72
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "CausalImpact")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -17,21 +16,7 @@ Run `cloud_details(, "CausalImpact")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/CausalImpact/new/CausalImpact.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
-* this is package ‘CausalImpact’ version ‘1.2.7’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'bsts', 'Boom'
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
@@ -41,38 +26,23 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/CausalImpact/old/CausalImpact.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘CausalImpact/DESCRIPTION’ ... OK
-* this is package ‘CausalImpact’ version ‘1.2.7’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'bsts', 'Boom'
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
```
-# cbar
+# NA
-* Version: 0.1.3
-* GitHub: https://github.com/zedoul/cbar
-* Source code: https://github.com/cran/cbar
-* Date/Publication: 2017-10-24 13:20:22 UTC
-* Number of recursive dependencies: 61
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "cbar")` for more info
+Run `cloud_details(, "NA")` for more info
@@ -81,22 +51,7 @@ Run `cloud_details(, "cbar")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/cbar/new/cbar.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cbar/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘cbar’ version ‘0.1.3’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'Boom', 'bsts'
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
@@ -106,48 +61,33 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/cbar/old/cbar.Rcheck’
-* using R version 4.1.1 (2021-08-10)
-* using platform: x86_64-pc-linux-gnu (64-bit)
-* using session charset: UTF-8
-* using option ‘--no-manual’
-* checking for file ‘cbar/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘cbar’ version ‘0.1.3’
-* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Packages required but not available: 'Boom', 'bsts'
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
-* DONE
-Status: 1 ERROR
```
-# conos
+# FAMetA
-* Version: 1.4.5
-* GitHub: https://github.com/kharchenkolab/conos
-* Source code: https://github.com/cran/conos
-* Date/Publication: 2022-01-21 09:12:56 UTC
-* Number of recursive dependencies: 239
+* Version: 0.1.5
+* GitHub: NA
+* Source code: https://github.com/cran/FAMetA
+* Date/Publication: 2023-01-11 09:33:11 UTC
+* Number of recursive dependencies: 90
-Run `cloud_details(, "conos")` for more info
+Run `cloud_details(, "FAMetA")` for more info
## In both
-* checking whether package ‘conos’ can be installed ... ERROR
+* checking whether package ‘FAMetA’ can be installed ... ERROR
```
Installation failed.
- See ‘/tmp/workdir/conos/new/conos.Rcheck/00install.out’ for details.
+ See ‘/tmp/workdir/FAMetA/new/FAMetA.Rcheck/00install.out’ for details.
```
## Installation
@@ -155,146 +95,122 @@ Run `cloud_details(, "conos")` for more info
### Devel
```
-* installing *source* package ‘conos’ ...
-** package ‘conos’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘FAMetA’ ...
+** package ‘FAMetA’ successfully unpacked and MD5 sums checked
** using staged installation
-** libs
-g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I"./include" -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
- from RcppExports.cpp:6:
-...
+** R
+** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.1.1/lib/R/site-library/leidenAlg/libs/leidenAlg.so':
- /rspm_builder/tmp/tmp.61RtH9bEOw/igraph/libs/igraph.so: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
+Error: package or namespace load failed for ‘LipidMS’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
+ there is no package called ‘readMzXmlData’
Execution halted
-ERROR: lazy loading failed for package ‘conos’
-* removing ‘/tmp/workdir/conos/new/conos.Rcheck/conos’
+ERROR: lazy loading failed for package ‘FAMetA’
+* removing ‘/tmp/workdir/FAMetA/new/FAMetA.Rcheck/FAMetA’
```
### CRAN
```
-* installing *source* package ‘conos’ ...
-** package ‘conos’ successfully unpacked and MD5 sums checked
+* installing *source* package ‘FAMetA’ ...
+** package ‘FAMetA’ successfully unpacked and MD5 sums checked
** using staged installation
-** libs
-g++ -std=gnu++11 -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I'/opt/R/4.1.1/lib/R/site-library/Rcpp/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppArmadillo/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppEigen/include' -I'/opt/R/4.1.1/lib/R/site-library/RcppProgress/include' -I/usr/local/include -I"./include" -fopenmp -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o
-In file included from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/RcppEigenForward.h:30,
- from /opt/R/4.1.1/lib/R/site-library/RcppEigen/include/RcppEigen.h:25,
- from RcppExports.cpp:6:
-...
+** R
+** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
-Error in dyn.load(file, DLLpath = DLLpath, ...) :
- unable to load shared object '/opt/R/4.1.1/lib/R/site-library/leidenAlg/libs/leidenAlg.so':
- /rspm_builder/tmp/tmp.61RtH9bEOw/igraph/libs/igraph.so: cannot open shared object file: No such file or directory
-Calls: ... namespaceImport -> loadNamespace -> library.dynam -> dyn.load
+Error: package or namespace load failed for ‘LipidMS’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
+ there is no package called ‘readMzXmlData’
Execution halted
-ERROR: lazy loading failed for package ‘conos’
-* removing ‘/tmp/workdir/conos/old/conos.Rcheck/conos’
+ERROR: lazy loading failed for package ‘FAMetA’
+* removing ‘/tmp/workdir/FAMetA/old/FAMetA.Rcheck/FAMetA’
```
-# ctsem
+# NA
-* Version: 3.6.0
-* GitHub: https://github.com/cdriveraus/ctsem
-* Source code: https://github.com/cran/ctsem
-* Date/Publication: 2022-03-10 11:20:19 UTC
-* Number of recursive dependencies: 125
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
-Run `cloud_details(, "ctsem")` for more info
+Run `cloud_details(, "NA")` for more info
-## In both
+## Error before installation
-* checking whether package ‘ctsem’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/00install.out’ for details.
- ```
+### Devel
-## Installation
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
### Devel
```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/ctsm.stan
-DIAGNOSTIC(S) FROM PARSER:
-Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
- Positive values rounded down, negative values rounded up or down in platform-dependent way.
-Wrote C++ file "stan_files/ctsm.cc"
-...
-stan_files/ctsm.hpp: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’:
-stan_files/ctsm.hpp:2348:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
- 2348 | T__ log_prob(std::vector& params_r__,
- | ^~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/ctsm.o] Error 1
-rm stan_files/ctsm.cc
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/new/ctsem.Rcheck/ctsem’
+
+
+
```
### CRAN
```
-* installing *source* package ‘ctsem’ ...
-** package ‘ctsem’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-"/opt/R/4.1.1/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/ctsm.stan
-DIAGNOSTIC(S) FROM PARSER:
-Info: integer division implicitly rounds to integer. Found int division: d * d - d / 2
- Positive values rounded down, negative values rounded up or down in platform-dependent way.
-Wrote C++ file "stan_files/ctsm.cc"
-...
-stan_files/ctsm.hpp: In member function ‘T__ model_ctsm_namespace::model_ctsm::log_prob(std::vector&, std::vector&, std::ostream*) const [with bool propto__ = false; bool jacobian__ = true; T__ = double]’:
-stan_files/ctsm.hpp:2348:9: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
- 2348 | T__ log_prob(std::vector& params_r__,
- | ^~~~~~~~
-g++: fatal error: Killed signal terminated program cc1plus
-compilation terminated.
-make: *** [/opt/R/4.1.1/lib/R/etc/Makeconf:175: stan_files/ctsm.o] Error 1
-rm stan_files/ctsm.cc
-ERROR: compilation failed for package ‘ctsem’
-* removing ‘/tmp/workdir/ctsem/old/ctsem.Rcheck/ctsem’
+
+
+
```
-# geocmeans
+# genekitr
-* Version: 0.2.0
-* GitHub: https://github.com/JeremyGelb/geocmeans
-* Source code: https://github.com/cran/geocmeans
-* Date/Publication: 2021-08-23 07:11:35 UTC
-* Number of recursive dependencies: 203
+* Version: 1.2.5
+* GitHub: https://github.com/GangLiLab/genekitr
+* Source code: https://github.com/cran/genekitr
+* Date/Publication: 2023-09-07 08:50:09 UTC
+* Number of recursive dependencies: 211
-Run `cloud_details(, "geocmeans")` for more info
+Run `cloud_details(, "genekitr")` for more info
@@ -303,18 +219,18 @@ Run `cloud_details(, "geocmeans")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/geocmeans/new/geocmeans.Rcheck’
+* using log directory ‘/tmp/workdir/genekitr/new/genekitr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘geocmeans/DESCRIPTION’ ... OK
+* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘geocmeans’ version ‘0.2.0’
+* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘reldist’
+Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -329,18 +245,18 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/geocmeans/old/geocmeans.Rcheck’
+* using log directory ‘/tmp/workdir/genekitr/old/genekitr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘geocmeans/DESCRIPTION’ ... OK
+* checking for file ‘genekitr/DESCRIPTION’ ... OK
* checking extension type ... Package
-* this is package ‘geocmeans’ version ‘0.2.0’
+* this is package ‘genekitr’ version ‘1.2.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘reldist’
+Package required but not available: ‘clusterProfiler’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -352,17 +268,17 @@ Status: 1 ERROR
```
-# loon.ggplot
+# ggPMX
-* Version: 1.3.1
-* GitHub: https://github.com/great-northern-diver/loon.ggplot
-* Source code: https://github.com/cran/loon.ggplot
-* Date/Publication: 2022-02-07 21:50:06 UTC
-* Number of recursive dependencies: 103
+* Version: 1.2.10
+* GitHub: https://github.com/ggPMXdevelopment/ggPMX
+* Source code: https://github.com/cran/ggPMX
+* Date/Publication: 2023-06-16 23:20:07 UTC
+* Number of recursive dependencies: 182
-Run `cloud_details(, "loon.ggplot")` for more info
+Run `cloud_details(, "ggPMX")` for more info
@@ -371,25 +287,82 @@ Run `cloud_details(, "loon.ggplot")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’
+* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘loon.ggplot’ version ‘1.3.1’
+* checking for file ‘ggPMX/DESCRIPTION’ ... OK
+* this is package ‘ggPMX’ version ‘1.2.10’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘loon’
+* checking package dependencies ... NOTE
+...
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
-Package suggested but not available for checking: ‘zenplots’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘ggPMX/DESCRIPTION’ ... OK
+* this is package ‘ggPMX’ version ‘1.2.10’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... NOTE
+...
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 2 NOTEs
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
@@ -399,42 +372,100 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’
+
+
+
+
+
+
+```
+# grandR
+
+
+
+* Version: 0.2.2
+* GitHub: https://github.com/erhard-lab/grandR
+* Source code: https://github.com/cran/grandR
+* Date/Publication: 2023-04-20 21:22:30 UTC
+* Number of recursive dependencies: 266
+
+Run `cloud_details(, "grandR")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/grandR/new/grandR.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK
-* checking extension type ... Package
-* this is package ‘loon.ggplot’ version ‘1.3.1’
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+* this is package ‘grandR’ version ‘0.2.2’
* package encoding: UTF-8
* checking package namespace information ... OK
-* checking package dependencies ... ERROR
-Package required but not available: ‘loon’
+* checking package dependencies ... NOTE
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘getting-started.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 2 NOTEs
-Package suggested but not available for checking: ‘zenplots’
-See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-manual.
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/grandR/old/grandR.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘grandR/DESCRIPTION’ ... OK
+* this is package ‘grandR’ version ‘0.2.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... NOTE
+...
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘getting-started.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
* DONE
-Status: 1 ERROR
+Status: 2 NOTEs
```
-# SSVS
+# lilikoi
-* Version: 1.0.0
-* GitHub: https://github.com/sabainter/SSVS
-* Source code: https://github.com/cran/SSVS
-* Date/Publication: 2022-03-08 20:20:12 UTC
-* Number of recursive dependencies: 100
+* Version: 2.1.1
+* GitHub: NA
+* Source code: https://github.com/cran/lilikoi
+* Date/Publication: 2022-10-05 19:00:02 UTC
+* Number of recursive dependencies: 220
-Run `cloud_details(, "SSVS")` for more info
+Run `cloud_details(, "lilikoi")` for more info
@@ -443,17 +474,18 @@ Run `cloud_details(, "SSVS")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/SSVS/new/SSVS.Rcheck’
+* using log directory ‘/tmp/workdir/lilikoi/new/lilikoi.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘SSVS/DESCRIPTION’ ... OK
-* this is package ‘SSVS’ version ‘1.0.0’
+* checking for file ‘lilikoi/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘lilikoi’ version ‘2.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘BoomSpikeSlab’
+Package required but not available: ‘RCy3’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -468,17 +500,18 @@ Status: 1 ERROR
### CRAN
```
-* using log directory ‘/tmp/workdir/SSVS/old/SSVS.Rcheck’
+* using log directory ‘/tmp/workdir/lilikoi/old/lilikoi.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘SSVS/DESCRIPTION’ ... OK
-* this is package ‘SSVS’ version ‘1.0.0’
+* checking for file ‘lilikoi/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘lilikoi’ version ‘2.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
-Package required but not available: ‘BoomSpikeSlab’
+Package required but not available: ‘RCy3’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
@@ -490,95 +523,83 @@ Status: 1 ERROR
```
-# valse
+# MarketMatching
-* Version: 0.1-0
+* Version: 1.2.0
* GitHub: NA
-* Source code: https://github.com/cran/valse
-* Date/Publication: 2021-05-31 08:00:02 UTC
-* Number of recursive dependencies: 53
+* Source code: https://github.com/cran/MarketMatching
+* Date/Publication: 2021-01-08 20:10:02 UTC
+* Number of recursive dependencies: 74
-Run `cloud_details(, "valse")` for more info
+Run `cloud_details(, "MarketMatching")` for more info
-## In both
-
-* checking whether package ‘valse’ can be installed ... ERROR
- ```
- Installation failed.
- See ‘/tmp/workdir/valse/new/valse.Rcheck/00install.out’ for details.
- ```
-
-## Installation
+## Error before installation
### Devel
```
-* installing *source* package ‘valse’ ...
-** package ‘valse’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
-Error in loadNamespace(x) : there is no package called ‘RcppGSL’
-...
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...):
- unable to load shared object '/tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so':
- /tmp/workdir/valse/new/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free
-Error: loading failed
-Execution halted
-ERROR: loading failed
-* removing ‘/tmp/workdir/valse/new/valse.Rcheck/valse’
+* using log directory ‘/tmp/workdir/MarketMatching/new/MarketMatching.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MarketMatching’ version ‘1.2.0’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
```
### CRAN
```
-* installing *source* package ‘valse’ ...
-** package ‘valse’ successfully unpacked and MD5 sums checked
-** using staged installation
-** libs
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGLLF.c -o EMGLLF.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c EMGrank.c -o EMGrank.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGLLF.c -o a.EMGLLF.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c a.EMGrank.c -o a.EMGrank.o
-gcc -I"/opt/R/4.1.1/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c valse_init.c -o valse_init.o
-Error in loadNamespace(x) : there is no package called ‘RcppGSL’
-...
-*** installing help indices
-** building package indices
-** testing if installed package can be loaded from temporary location
-Error: package or namespace load failed for ‘valse’ in dyn.load(file, DLLpath = DLLpath, ...):
- unable to load shared object '/tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so':
- /tmp/workdir/valse/old/valse.Rcheck/00LOCK-valse/00new/valse/libs/valse.so: undefined symbol: gsl_vector_free
-Error: loading failed
-Execution halted
-ERROR: loading failed
-* removing ‘/tmp/workdir/valse/old/valse.Rcheck/valse’
+* using log directory ‘/tmp/workdir/MarketMatching/old/MarketMatching.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘MarketMatching/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘MarketMatching’ version ‘1.2.0’
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'CausalImpact', 'bsts', 'Boom'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
```
-# vivid
+# MARVEL
-* Version: 0.2.3
+* Version: 1.4.0
* GitHub: NA
-* Source code: https://github.com/cran/vivid
-* Date/Publication: 2021-11-20 01:30:02 UTC
-* Number of recursive dependencies: 202
+* Source code: https://github.com/cran/MARVEL
+* Date/Publication: 2022-10-31 10:22:50 UTC
+* Number of recursive dependencies: 238
-Run `cloud_details(, "vivid")` for more info
+Run `cloud_details(, "MARVEL")` for more info
@@ -587,24 +608,24 @@ Run `cloud_details(, "vivid")` for more info
### Devel
```
-* using log directory ‘/tmp/workdir/vivid/new/vivid.Rcheck’
+* using log directory ‘/tmp/workdir/MARVEL/new/MARVEL.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.2.3’
+* checking for file ‘MARVEL/DESCRIPTION’ ... OK
+* this is package ‘MARVEL’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
-* checking tests ... OK
- Running ‘testthat.R’
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘vivid.Rmd’ using ‘UTF-8’... OK
- ‘vividQStart.Rmd’ using ‘UTF-8’... OK
+ ‘MARVEL.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
@@ -617,24 +638,24 @@ Status: 2 NOTEs
### CRAN
```
-* using log directory ‘/tmp/workdir/vivid/old/vivid.Rcheck’
+* using log directory ‘/tmp/workdir/MARVEL/old/MARVEL.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-manual’
-* checking for file ‘vivid/DESCRIPTION’ ... OK
-* this is package ‘vivid’ version ‘0.2.3’
+* checking for file ‘MARVEL/DESCRIPTION’ ... OK
+* this is package ‘MARVEL’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
-* checking tests ... OK
- Running ‘testthat.R’
+* checking installed files from ‘inst/doc’ ... OK
+* checking files in ‘vignettes’ ... OK
+* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... NONE
- ‘vivid.Rmd’ using ‘UTF-8’... OK
- ‘vividQStart.Rmd’ using ‘UTF-8’... OK
+ ‘MARVEL.Rmd’ using ‘UTF-8’... OK
* checking re-building of vignette outputs ... OK
* DONE
Status: 2 NOTEs
@@ -643,4 +664,576 @@ Status: 2 NOTEs
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# numbat
+
+
+
+* Version: 1.3.2-1
+* GitHub: https://github.com/kharchenkolab/numbat
+* Source code: https://github.com/cran/numbat
+* Date/Publication: 2023-06-17 18:50:02 UTC
+* Number of recursive dependencies: 136
+
+Run `cloud_details(, "numbat")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/numbat/new/numbat.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+* this is package ‘numbat’ version ‘1.3.2-1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'ggtree', 'scistreer'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/numbat/old/numbat.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘numbat/DESCRIPTION’ ... OK
+* this is package ‘numbat’ version ‘1.3.2-1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Packages required but not available: 'ggtree', 'scistreer'
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# oHMMed
+
+
+
+* Version: 1.0.1
+* GitHub: https://github.com/LynetteCaitlin/oHMMed
+* Source code: https://github.com/cran/oHMMed
+* Date/Publication: 2023-11-19 07:50:02 UTC
+* Number of recursive dependencies: 127
+
+Run `cloud_details(, "oHMMed")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/oHMMed/new/oHMMed.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘oHMMed/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘oHMMed’ version ‘1.0.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘cvms’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/oHMMed/old/oHMMed.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘oHMMed/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘oHMMed’ version ‘1.0.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... ERROR
+Package required but not available: ‘cvms’
+
+See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
+manual.
+* DONE
+Status: 1 ERROR
+
+
+
+
+
+```
+# OlinkAnalyze
+
+
+
+* Version: 3.6.0
+* GitHub: NA
+* Source code: https://github.com/cran/OlinkAnalyze
+* Date/Publication: 2023-11-03 20:00:03 UTC
+* Number of recursive dependencies: 212
+
+Run `cloud_details(, "OlinkAnalyze")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/OlinkAnalyze/new/OlinkAnalyze.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘OlinkAnalyze’ version ‘3.6.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
+ ‘Vignett.Rmd’ using ‘UTF-8’... OK
+ ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
+ ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/OlinkAnalyze/old/OlinkAnalyze.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘OlinkAnalyze/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘OlinkAnalyze’ version ‘3.6.0’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘OutlierExclusion.Rmd’ using ‘UTF-8’... OK
+ ‘Vignett.Rmd’ using ‘UTF-8’... OK
+ ‘bridging_introduction.Rmd’ using ‘UTF-8’... OK
+ ‘plate_randomizer.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# SCpubr
+
+
+
+* Version: 2.0.2
+* GitHub: https://github.com/enblacar/SCpubr
+* Source code: https://github.com/cran/SCpubr
+* Date/Publication: 2023-10-11 09:50:02 UTC
+* Number of recursive dependencies: 306
+
+Run `cloud_details(, "SCpubr")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/SCpubr/new/SCpubr.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SCpubr/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘SCpubr’ version ‘2.0.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘reference_manual.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 WARNING, 2 NOTEs
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/SCpubr/old/SCpubr.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘SCpubr/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘SCpubr’ version ‘2.0.2’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... OK
+ Running ‘testthat.R’
+* checking for unstated dependencies in vignettes ... OK
+* checking package vignettes in ‘inst/doc’ ... OK
+* checking running R code from vignettes ... NONE
+ ‘reference_manual.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 WARNING, 2 NOTEs
+
+
+
+
+
+```
+# tidySEM
+
+
+
+* Version: 0.2.6
+* GitHub: https://github.com/cjvanlissa/tidySEM
+* Source code: https://github.com/cran/tidySEM
+* Date/Publication: 2023-10-24 18:50:02 UTC
+* Number of recursive dependencies: 216
+
+Run `cloud_details(, "tidySEM")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tidySEM’ version ‘0.2.6’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+ ‘SMART_LCA_checklist.Rmd’ using ‘UTF-8’... OK
+ ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
+ ‘lca_confirmatory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_exploratory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_lcga.Rmd’ using ‘UTF-8’... OK
+ ‘lca_ordinal.Rmd’ using ‘UTF-8’... OK
+ ‘sem_graph.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+### CRAN
+
+```
+* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’
+* using R version 4.1.1 (2021-08-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using option ‘--no-manual’
+* checking for file ‘tidySEM/DESCRIPTION’ ... OK
+* checking extension type ... Package
+* this is package ‘tidySEM’ version ‘0.2.6’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+...
+ ‘SMART_LCA_checklist.Rmd’ using ‘UTF-8’... OK
+ ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK
+ ‘lca_confirmatory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_exploratory.Rmd’ using ‘UTF-8’... OK
+ ‘lca_lcga.Rmd’ using ‘UTF-8’... OK
+ ‘lca_ordinal.Rmd’ using ‘UTF-8’... OK
+ ‘sem_graph.Rmd’ using ‘UTF-8’... OK
+* checking re-building of vignette outputs ... OK
+* DONE
+Status: 1 NOTE
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
+```
+# NA
+
+
+
+* Version: NA
+* GitHub: NA
+* Source code: https://github.com/cran/NA
+* Number of recursive dependencies: 0
+
+Run `cloud_details(, "NA")` for more info
+
+
+
+## Error before installation
+
+### Devel
+
+```
+
+
+
+
+
+
+```
+### CRAN
+
+```
+
+
+
+
+
+
```
diff --git a/revdep/problems.md b/revdep/problems.md
index 295c4083..ec848b10 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,14 +1,14 @@
-# dials
+# duke
-* Version: 0.1.0
-* GitHub: https://github.com/tidymodels/dials
-* Source code: https://github.com/cran/dials
-* Date/Publication: 2022-01-31 19:00:02 UTC
-* Number of recursive dependencies: 72
+* Version: 0.0.1
+* GitHub: https://github.com/aidangildea/duke
+* Source code: https://github.com/cran/duke
+* Date/Publication: 2023-04-12 11:30:02 UTC
+* Number of recursive dependencies: 91
-Run `cloud_details(, "dials")` for more info
+Run `cloud_details(, "duke")` for more info
@@ -18,61 +18,124 @@ Run `cloud_details(, "dials")` for more info
```
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ` if (min(limits) < min(b)) `
+ Complete output:
+ > # This file is part of the standard setup for testthat.
+ > # It is recommended that you do not modify it.
+ > #
+ > # Where should you do additional test configuration?
+ > # Learn more about the roles of various files in:
+ > # * https://r-pkgs.org/tests.html
+ > # * https://testthat.r-lib.org/reference/test_package.html#special-files
+ ...
- body(actual$trans$format)[1:6] vs body(expected$trans$format)[1:7]
- `{`
- - ` if (!is.null(names(x))) `
- + ` if (!is.null(names(x))) {`
- ` return(names(x))`
- + ` }`
- ` ret <- format(x, ..., trim = TRUE, justify = "left")`
- ` ret[is.na(x)] <- NA`
- ` ret`
+ ══ Failed tests ════════════════════════════════════════════════════════════════
+ ── Failure ('test-scale_duke_color_discrete.R:42:3'): appropriate fill for factors over 8-levels ──
+ `ggplot2::ggplot_build(p4)` did not throw the expected warning.
+ ── Failure ('test-scale_duke_fill_discrete.R:47:3'): appropriate fill for factors over 8-levels ──
+ `ggplot2::ggplot_build(p4)` did not throw the expected warning.
- [ FAIL 4 | WARN 0 | SKIP 11 | PASS 433 ]
+ [ FAIL 2 | WARN 4 | SKIP 0 | PASS 25 ]
Error: Test failures
Execution halted
```
-# DriveML
+# ggside
-* Version: 0.1.4
-* GitHub: https://github.com/daya6489/DriveML
-* Source code: https://github.com/cran/DriveML
-* Date/Publication: 2021-10-18 11:10:01 UTC
-* Number of recursive dependencies: 127
+* Version: 0.2.2
+* GitHub: https://github.com/jtlandis/ggside
+* Source code: https://github.com/cran/ggside
+* Date/Publication: 2022-12-04 22:30:02 UTC
+* Number of recursive dependencies: 78
-Run `cloud_details(, "DriveML")` for more info
+Run `cloud_details(, "ggside")` for more info
## Newly broken
+* checking tests ... ERROR
+ ```
+ Running ‘testthat.R’
+ Running the tests in ‘tests/testthat.R’ failed.
+ Complete output:
+ > library(testthat)
+ > library(vdiffr)
+ > library(ggplot2)
+ > library(ggside)
+ Registered S3 method overwritten by 'ggside':
+ method from
+ +.gg ggplot2
+ ...
+ • non_aes_mapping_legend/non-aes-color-blue.svg
+ • non_aes_mapping_legend/non-aes-xcolor-red.svg
+ • vdiff_irisScatter/collapsed-histo.svg
+ • vdiff_irisScatter/facetgrid-collapsed-density.svg
+ • vdiff_irisScatter/facetgrid-histo.svg
+ • vdiff_irisScatter/facetgrid-side-density.svg
+ • vdiff_irisScatter/stacked-side-density.svg
+ • vdiff_irisScatter/yside-histo.svg
+ Error: Test failures
+ Execution halted
+ ```
+
+# WoodSimulatR
+
+
+
+* Version: 0.6.0
+* GitHub: NA
+* Source code: https://github.com/cran/WoodSimulatR
+* Date/Publication: 2022-06-20 06:40:07 UTC
+* Number of recursive dependencies: 75
+
+Run `cloud_details(, "WoodSimulatR")` for more info
+
+
+
+## Newly broken
+
+* checking examples ... ERROR
+ ```
+ Running examples in ‘WoodSimulatR-Ex.R’ failed
+ The error most likely occurred in:
+
+ > ### Name: simbase_covar
+ > ### Title: Calculate reference data for simulating values based on a
+ > ### covariance matrix approach
+ > ### Aliases: simbase_covar
+ >
+ > ### ** Examples
+ >
+ ...
+ [1] "t"
+
+ attr(,"class")
+ [1] "simbase_covar"
+ >
+ > # calcuate a simbase with log-transformed f
+ > simbase_covar(dataset, c('f', 'E', 'rho', 'E_dyn'), list(f = scales::log_trans()));
+ Error in simbase_covar(dataset, c("f", "E", "rho", "E_dyn"), list(f = scales::log_trans())) :
+ All transforms must be objects of class "trans" (see scales::trans)
+ Execution halted
+ ```
+
* checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
...
- --- re-building ‘DriveML.Rmd’ using rmarkdown
- Quitting from lines 341-343 (DriveML.Rmd)
- Error: processing vignette 'DriveML.Rmd' failed with diagnostics:
- `scale_cut` must be a named numeric vector
- --- failed re-building ‘DriveML.Rmd’
+ --- re-building ‘woodsimulatr_basics.Rmd’ using rmarkdown
+
+ Quitting from lines 431-439 [unnamed-chunk-15] (woodsimulatr_basics.Rmd)
+ Error: processing vignette 'woodsimulatr_basics.Rmd' failed with diagnostics:
+ All transforms must be objects of class "trans" (see scales::trans)
+ --- failed re-building ‘woodsimulatr_basics.Rmd’
SUMMARY: processing the following file failed:
- ‘DriveML.Rmd’
+ ‘woodsimulatr_basics.Rmd’
Error: Vignette re-building failed.
Execution halted
```
-## In both
-
-* checking data for non-ASCII characters ... NOTE
- ```
- Note: found 8 marked UTF-8 strings
- ```
-