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NEWS.md

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shar 2.3.1

  • Various
    • Update Docs

shar 2.3

  • Improvements
    • Option to return fitted parameters during fit_point_process
    • Using NA instead of "NA"
  • Various
    • Iterations and stopping criterion are vectors instead of list during reconstruct_algorithm

shar 2.2.1

  • Improvements
    • Simplify roxygen2 docs

shar 2.2

  • Improvements
    • Added a new function reconstruct_pattern_multi() including several internal functions and methods

shar 2.1.1

  • Bugfixes (thanks to @baddstats)

shar 2.1

  • Improvements
    • Remove comp_fast argument
    • Speed improvements of computation
    • General updates to code structure
  • Bugfixes
    • Removed n_points and window argument from reconstruction due to methodological issues
    • Bugfix related to wrap/unwrap raster and printing

shar 2.0.4

  • Improvements
    • Remove Sys.sleep for verbose reconstruction

shar 2.0.3

  • Improvements
    • Allow fixed max r distance during pattern reconstruction

shar 2.0.2

  • Various
    • Update spatstat dependency

shar 2.0.1

  • Improvements
    • Better approach for external repo
  • Various
    • Fixing typo in maintainer name

shar 2.0.0

  • Improvements
    • Using terra instead of raster
  • Bugfixes
    • Naming raster values "layer"
  • New functionality
    • Adding pack_randomized() and unpack_randomized() due to terra saving behavior

shar 1.3.2

  • Improvements
    • Improvement of classify_habitats() to be more variable
    • Adding breaks argument to results_habitat_association()
    • Adding classint_to_vector() helper function
    • Include new spatstat package structure

shar 1.3.1

  • Bugfixes
    • Bugfix in plot.rd_pat() and plot.rd_mar()
  • New functionality
    • Adding internal sample_randomized() function used during plotting

shar 1.3

  • Improvements
    • Better documentation
    • Combine reconstruct_pattern_homo(), reconstruct_pattern_cluster(), and reconstruct_pattern_hetero() to reconstruct_pattern()
    • Replaced plot_randomized_*() function with generic plot() methods
    • Adding warnings and errors if NA values are present
  • New functionality
    • list_to_randomized() function
    • Parallelization article
  • Adding JOSS paper as reference

shar 1.2.1

  • Improvements
    • reconstruct_pattern_homo() has arguments to specify number of points and window
    • reconstruct_pattern_marks() allows to have different number of points for pattern and marked_pattern argument

shar 1.2

  • Improvements
    • Include new spatstat package structure
    • Use GPL3 License

shar 1.1.1

  • Improvements
    • Add logo
    • Update to MIT License
    • renamed master to main branch

shar 1.1

  • Improvements
    • Use energy_df to get energy for printing if available
    • Updated tests
    • More stable progress printing

shar 1.0.1

  • Improvements
    • No calculation of energy for printing (too slow)

shar 1.0

  • Improvements
    • Printing methods for most objects
    • Possibility to specify intervals of r for all reconstruction functions
  • New functionality
    • plot_energy() to plot energy over iterations for reconstructed patterns
    • reconstruct_pattern_hetero() allows to reconstruct heterogeneous patterns
  • Renameing/Structure
    • reconstruct_pattern() was split to three functions: reconstruct_pattern_homo(), reconstruct_pattern_hetero(), reconstruct_pattern_cluster(),
    • reconstruct_marks() is now called reconstruct_pattern_marks()

shar 0.5

  • Improvements
    • Annealing probability can be specified for reconstruction

shar 0.4

  • Improvements
    • Easier user experience because classes are used to specify provided input
    • results_habitat_associations() checks if extent of inputs is identical
    • reconstruct_marks() and calculate_energy() use now weights for the summary functions
  • Bugfixes
    • Bug in calculate_energy() for reconstructed marks

shar 0.3.1

  • Improvements
    • Better structure of vignettes
    • Adding CONTRIBUTING.md
    • Trying to fix some failing tests for older R versions
  • New functionality
  • Allowing to translate raster only in n steps

shar 0.3

  • Improvements
    • plot_randomized_pattern() now uses envelopes to plot randomized summary functions
    • plot_randomized_pattern() includes a quantum bar
    • plot_randomized_pattern() now can return plots after each other (Press )
    • calculate_engery() can also calculate the energy for marked reconstructions
    • Improved warning messages
  • Bugfixes
    • Explicitly C++11 compiler
  • New functionality
    • plot_randomized_pattern() to plot randomized rasters

shar 0.2.1

  • Improvements
    • Minor speed improvement for reconstruct_pattern(), reconstruct_marks() and calculate_energy()
      • The starting pattern is now identical for all n_random and only the relocation process differs between randomization
      • All summary functions are only calculated for 250 steps from 0 to rmax
  • Bugfixes
  • New functionality
    • rcpp_sample() as a faster Rcpp implementation of sample()

shar 0.2

  • Improvements
    • Replaced cat() with message() for all printing to console
    • All defaults set to n_random = 1
    • comp_fast argument equals TRUE if number of points exceed threshold
    • reconstruct_pattern() stops if energy did not decrease for n iterations
    • reconstruct_marks() stops if energy did not decrease for n iterations
    • plot_randomized_pattern() can also plot point patterns
  • Bugfixes
    • Bug in fit_point_process() that more points as present could be removed from simulated pattern
    • Bug in reconstruct_pattern() that more points as present could be removed from simulated pattern

shar 0.1

  • First submission to CRAN