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ref.bib
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@misc{anfinsen1972studies,
title={Studies on the principles that govern the folding of protein chains},
author={Anfinsen, Christian B},
year={1972}
}
@article{anfinsen1973principles,
title={Principles that govern the protein folding chains},
author={Anfinsen, Christian B},
journal={Science},
volume={181},
pages={233--230},
year={1973}
}
@article{stillinger1993toy,
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@article{stillinger1995collective,
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@article{simpson2000genome,
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@article{ptitsyn1996determinable,
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@article{dobson1999protein,
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@article{fraenkel1993complexity,
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@article{zhao2008advances,
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@inproceedings{chen2009novel,
title={A novel clustering based niching EDA for protein folding},
author={Chen, Benhui and Hu, Jinglu},
booktitle={Nature \& Biologically Inspired Computing, 2009. NaBIC 2009. World Congress on},
pages={748--753},
year={2009},
organization={IEEE}
}
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@article{mount2004sequence,
title={Sequence and genome analysis},
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@book{anderson1986machine,
title={Machine learning: An artificial intelligence approach},
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@article{liang2004annealing,
title={Annealing contour Monte Carlo algorithm for structure optimization in an off-lattice protein model},
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volume={120},
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pages={6756--6763},
year={2004},
publisher={AIP Publishing}
}
@article{lee2008re,
title={Re-examination of structure optimization of off-lattice protein AB models by conformational space annealing},
author={Lee, Jinwoo and Joo, Keehyoung and Kim, Seung-Yeon and Lee, Jooyoung},
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volume={29},
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@article{kim2006statistical,
title={Statistical-temperature Monte Carlo and molecular dynamics algorithms},
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}
@article{unger1993genetic,
title={Genetic algorithms for protein folding simulations},
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journal={Journal of molecular biology},
volume={231},
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}
@article{santana2008protein,
title={Protein folding in simplified models with estimation of distribution algorithms},
author={Santana, Roberto and Larra{\~n}aga, Pedro and Lozano, Jose Antonio},
journal={Evolutionary Computation, IEEE Transactions on},
volume={12},
number={4},
pages={418--438},
year={2008},
publisher={IEEE}
}
@inproceedings{chen2009novel,
title={A novel clustering based niching EDA for protein folding},
author={Chen, Benhui and Hu, Jinglu},
booktitle={Nature \& Biologically Inspired Computing, 2009. NaBIC 2009. World Congress on},
pages={748--753},
year={2009},
organization={IEEE}
}
@article{liu2013heuristic,
title={Heuristic-based tabu search algorithm for folding two-dimensional AB off-lattice model proteins},
author={Liu, Jingfa and Sun, Yuanyuan and Li, Gang and Song, Beibei and Huang, Weibo},
journal={Computational biology and chemistry},
volume={47},
pages={142--148},
year={2013},
publisher={Elsevier}
}
@article{li2014protein,
title={Protein secondary structure optimization using an improved artificial bee colony algorithm based on AB off-lattice model},
author={Li, Bai and Li, Ya and Gong, Ligang},
journal={Engineering Applications of Artificial Intelligence},
volume={27},
pages={70--79},
year={2014},
publisher={Elsevier}
}
@article{brooks1995optimization,
title={Optimization using simulated annealing},
author={Brooks, SP and Morgan, BJT},
journal={The Statistician},
pages={241--257},
year={1995},
publisher={JSTOR}
}
@book{sheldon2002first,
title={A first course in probability},
author={Sheldon, Ross and others},
year={2002},
publisher={Pearson Education India}
}