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implemented EM from scratch for pairwise interactions CI #55: Commit fb807c1 pushed by ashuaibi7
December 12, 2024 20:23 40s main
main
December 12, 2024 20:23 40s
remove return statement in em estimation for consistency CI #54: Commit ec8e9af pushed by ashuaibi7
December 12, 2024 20:00 37s main
main
December 12, 2024 20:00 37s
switch scipy optimization procedure to SLSQP to handle constraints CI #53: Commit 3355616 pushed by ashuaibi7
December 12, 2024 19:24 41s main
main
December 12, 2024 19:24 41s
verify bmr_pmf and counts exist by comparing to None to resolve any/a… CI #52: Commit ba02f21 pushed by ashuaibi7
December 12, 2024 19:14 46s main
main
December 12, 2024 19:14 46s
add reminder to handle edge cases when pi = 0 or 1 more thoroughly CI #51: Commit ebd45fa pushed by ashuaibi7
December 12, 2024 17:16 40s main
main
December 12, 2024 17:16 40s
change check on pi to see if it is None for clearer error warning whe… CI #50: Commit c0f3687 pushed by ashuaibi7
December 12, 2024 16:45 40s main
main
December 12, 2024 16:45 40s
extract method to load counts and bmr pmfs and to verify input files CI #49: Commit 14401a0 pushed by ashuaibi7
December 12, 2024 16:26 48s main
main
December 12, 2024 16:26 48s
ran single gene em estimation and templated out remaining code for ru… CI #48: Commit 997e7ba pushed by ashuaibi7
December 12, 2024 16:15 45s main
main
December 12, 2024 16:15 45s
added necessary comments and todo statements for remaining work and c… CI #47: Commit 80774b8 pushed by ashuaibi7
December 12, 2024 16:15 40s main
main
December 12, 2024 16:15 40s
improved docstrings to be in sphinx documentation format CI #46: Commit 539ce4e pushed by ashuaibi7
December 12, 2024 16:10 40s main
main
December 12, 2024 16:10 40s
extracted and refactored methods to verify parameter values CI #45: Commit de148ad pushed by ashuaibi7
December 12, 2024 16:06 45s main
main
December 12, 2024 16:06 45s
added template code for methods to be implemented CI #44: Commit 87c1867 pushed by ashuaibi7
December 12, 2024 15:44 37s main
main
December 12, 2024 15:44 37s
call methods by passing in pi instead of using class variable pi CI #43: Commit 98667e2 pushed by ashuaibi7
December 12, 2024 15:41 52s main
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December 12, 2024 15:41 52s
include gene and sample names in final bmr pmf and count matrix files CI #42: Commit da65a53 pushed by ashuaibi7
December 12, 2024 15:23 40s main
main
December 12, 2024 15:23 40s
modified argument to match new argument names in identify function CI #41: Commit 50a0a29 pushed by ashuaibi7
December 12, 2024 15:14 45s main
main
December 12, 2024 15:14 45s
modified argumenet name for identify parser to be more accurate and a… CI #40: Commit 1581cfe pushed by ashuaibi7
December 12, 2024 15:11 42s main
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December 12, 2024 15:11 42s
added todo comment as reminder to implement EM using pomegranate library CI #39: Commit 159bac9 pushed by ashuaibi7
December 12, 2024 14:59 49s main
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December 12, 2024 14:59 49s
create missing docstrings and revise old docstrings to use sphinx sty… CI #38: Commit 442e2f1 pushed by ashuaibi7
December 11, 2024 15:59 41s main
main
December 11, 2024 15:59 41s
extract methods for data verification of bmr_pmf and counts CI #37: Commit 2fa862c pushed by ashuaibi7
December 11, 2024 13:07 39s main
main
December 11, 2024 13:07 39s
implemented EM algorithm from scratch for single gene model and creat… CI #36: Commit 85fc53d pushed by ashuaibi7
December 10, 2024 18:08 41s main
main
December 10, 2024 18:08 41s
created unit tests for single gene class and methods CI #35: Commit b5f2fd9 pushed by ashuaibi7
December 4, 2024 16:36 40s main
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December 4, 2024 16:36 40s
ensure probability of gene in bmr_pmf is nonzero to avoid computing l… CI #34: Commit 0eba595 pushed by ashuaibi7
December 4, 2024 16:34 43s main
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December 4, 2024 16:34 43s
switched defaultdict to normal dict for bmr_pmf to avoid issues in re… CI #33: Commit 77cca09 pushed by ashuaibi7
December 4, 2024 16:26 38s main
main
December 4, 2024 16:26 38s
modified check on instance variables to compare to None instead due t… CI #32: Commit 7fbfd25 pushed by ashuaibi7
December 4, 2024 16:05 48s main
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December 4, 2024 16:05 48s
Update and prioritize next steps CI #31: Commit 6a97d3d pushed by ashuaibi7
November 23, 2024 13:20 1m 33s main
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November 23, 2024 13:20 1m 33s
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