BiB-reproducibility2.bib

%% Added references  

@article{Yauk2004,
author = {Yauk CL, Berndt ML, Williams A, Douglas GR},
title = {Comprehensive comparison of six microarray technologies},
journal = {Nucleic Acids Res.},
year = {2004}
}

@article{LiuJenssen2007,
author = {Liu F, Jenssen TK, Trimarchi J, Punzo C, Cepko CL, Ohno-Machado L, Hovig E, Kuo WP},
title = {Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates},
journal = {BMC Genomics},
year = {2007}
}

@article{Kuo2006,
author = {Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF 3rd, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK},
title = {A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies},
journal = {Nat Biotechnol},
year = {2006}
}

@article{GitDvinge2010,
author = {Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, Hadfield J, Bertone P, Caldas C},
title = {Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression},
journal = {RNA},
year = {2010}
}


@article{ChangWei2012,
author = {Chang JW, Wei NC, Su HJ, Huang JL, Chen TC, Wu YC, Yu CT, Hou MM, Hsieh CH, Hsieh JJ, Wu CE, Cheng HY, Hsu T, Wang TH},
title = {Comparison of genomic signatures of non-small cell lung cancer recurrence between two microarray platforms},
journal = {Anticancer Res.},
year = {2012}
}


@article{WangHowel2011,
author = {Wang B, Howel P, Bruheim S, Ju J, Owen LB, Fodstad O, Xi Y},
title = {Systematic evaluation of three microRNA profiling platforms: microarray, beads array, and quantitative real-time PCR array},
journal = {PLoS One},
year = {2011}
}


@article{LiuKuo2011,
author = {Liu F, Kuo WP, Jenssen TK, Hovig E},
title = {Performance comparison of multiple microarray platforms for gene expression profiling},
journal = {Methods Mol Biol.},
year = {2011}
}

@article{Baumbusch2008,
author = {Baumbusch LO, Aaroe J, Johansen FE, Hicks J, Sun H, Bruhn L, Gunderson K, Naume B, Kristensen VN, Liestol K, Borresen-Dale AL, Lingjaerde OC.},
title = {Comparison of the Agilent, ROMA/NimbleGen and Illumina platforms for classification of copy number alterations in human breast tumors},
journal = {BMC Genomics},
year = {2011}
}

@article{AlMulla2004,
author = {Al-Mulla F, Al-Tamimi R, Bitar MS.},
title = {Comparison of two probe preparation methods using long oligonucleotide microarrays},
journal = {Biotechniques},
year = {2004}
}


@article{Duewer2009,
author = {Duewer DL, Jones WD, Reid LH, Salit M.},
title = {Learning from microarray interlaboratory studies: measures of precision for gene expression},
journal = {BMC Genomics},
year = {2009}
}

@book{Scherer2009,
editor={Andreas Scherer},
title = {Batch Effects and Noise in Microarray Experiments: Sources and Solutions},
publisher = {John Wiley \& Sons, Ltd},
year = {2009}
}