Nothing useful printing, not even the help?

[AstroRipples]

Hi y'all 👋

I was pointed here by Etienne Bonnassieux, with whom I'd been discussing a MakeMask bug (DS9 regions not being included when running MakeMask on a WSclean image). Keen to give this a try. It looks like I've successfully installed breizorro but when I run it, I don't even get the help, only a handful of DeprecationWarnings:

$ python3 breizorro.py --help
/local/work/riseley/breizorro/breizorro/breizorro.py:15: DeprecationWarning: Please use `binary_dilation` from the `scipy.ndimage` namespace, the `scipy.ndimage.morphology` namespace is deprecated.
  from scipy.ndimage.morphology import binary_dilation, binary_fill_holes
/local/work/riseley/breizorro/breizorro/breizorro.py:15: DeprecationWarning: Please use `binary_fill_holes` from the `scipy.ndimage` namespace, the `scipy.ndimage.morphology` namespace is deprecated.
  from scipy.ndimage.morphology import binary_dilation, binary_fill_holes
/local/work/riseley/breizorro/breizorro/breizorro.py:16: DeprecationWarning: Please use `label` from the `scipy.ndimage` namespace, the `scipy.ndimage.measurements` namespace is deprecated.
  from scipy.ndimage.measurements import label, find_objects
/local/work/riseley/breizorro/breizorro/breizorro.py:16: DeprecationWarning: Please use `find_objects` from the `scipy.ndimage` namespace, the `scipy.ndimage.measurements` namespace is deprecated.
  from scipy.ndimage.measurements import label, find_objects
$

Any thoughts?

[IanHeywood]

Is there a breizorro executable available in the path following installation?

[cyriltasse]

@AstroRipples out of curiosity what the MakeMask error message?

[AstroRipples]

Hey @cyriltasse 👋 when I run MakeMask, I don't get any error message, it's simply that the green circles from the DS9 region file are not added to the auto-mask.

The thing that's strangest about it is that this is only occurring for the WSclean image of this particular field. When I ran MakeMask previously on other WSclean images of different fields, the DS9 region file was parsed correctly. Similarly, when I ran MakeMask on DDF images of this field, the region file was also parsed correctly 🤷

[AstroRipples]

Okay, looks like I just found the underlying issue 🥳 See here