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🔭 I am currently working on IOM (Immuno-Oncology-Microbiome) projects with goal to support microbiome based therapeutics in various cancer types.
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🔭 I have developed a a python based software called GuideMaker and its Web Aplication as a part of post-doctoral research with Adam Rivers at USDA-ARS.
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🌱 I have experience in CD/CI components- GitHub Actions and Workflows
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🌱 Actively building omics pipelines using Nextflow and snakemake.
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💬 Ask me about Microbial Ecology, Microbiome Analytics, Microbiome Networks
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📧 Contact me @ [email protected]
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🌱 Some of my Rshiny App 🌱IBD_VS_NonIBD 🌱KeioPlate Mapper 🌱txplorer
- Tracking Flu Strains Using HyperLogLog and k-mer Analysis
- Predicting Microbe-Derived-Epitopes (MDEs) using denovo genome assembly approach
- Guide to Write Python Package as Software Developer: Exploring CD/CI Using GitHub Workflow and Actions, and AWS Fargate
- Evaluating the treatment effects at each individual and across sites
- KEIO: A python software to process illumina reads for keio-collection type project
- Deploying Web App built using Streamlit on Google Kubernetes Engine
- Testing the speed and the memory usage of various approaches to store information in python
- Creating HPC cluster in AWS with Slurm Workload Manager (SLURM)
- Is ability to detect a gene a function of seqencing depth?
- Python: Append Vs. Concat
- Designing a targeted panel - for Clinical Genomics
- Extract specific sequences from a big FASTA file
- Using NCBI API's in python to get data
- kmer and minHash method for genome comparions
- Metagenomics tutorial
