We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Similar to #57
From BEDPE-formatted input for multiple files, create a merged file indicating presence/absence for a given tool.
i.e., a tool that takes as input BEDPE-formatted results from Fusioncatcher, PAVfinder, etc, and produces output that looks like:
chrom1 start1 end1 chrom2 start2 end2 name score strand1 strand2 orient1 orient2 fusioncatcher pavfinder chr1 1 2 chr2 1 2 FOO-BAR 100 + + + + 1 0
Or:
chrom1 start1 end1 chrom2 start2 end2 name score strand1 strand2 orient1 orient2 observations chr1 1 2 chr2 1 2 FOO-BAR 100 + + + + fusioncatcher,pavfinder
The text was updated successfully, but these errors were encountered:
BEDPE files are on ORCA at:
/home/projects/hackseq17_3/pipeline_results/
Sorry, something went wrong.
I will give this a quick shot with R to see where we can get to.
No branches or pull requests
Similar to #57
From BEDPE-formatted input for multiple files, create a merged file indicating presence/absence for a given tool.
i.e., a tool that takes as input BEDPE-formatted results from Fusioncatcher, PAVfinder, etc, and produces output that looks like:
Or:
The text was updated successfully, but these errors were encountered: