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Commits on Oct 30, 2024

• Merge pull request #57 from reginabarzilaygroup/v1.6.1_dev

  Show description for 1e358f8
  jsilter

  authored
  1e358f8

Commits on Oct 15, 2024

• Set default number of threads to min(8, cpu count)

  jsilter

  committed
  88ad559

Commits on Sep 9, 2024

• Merge pull request #51 from reginabarzilaygroup/v1.6.0_dev

  Show description for 479de0a
  jsilter

  authored
  479de0a

• Squeeze out singular dimensions of attention array.

  Show description for 9b277e8
  jsilter

  committed
  9b277e8

• Add imageio to list of requirements.

  jsilter

  committed
  bdbf5b4

• Add example python scripts

  jsilter

  committed
  844c4a5

• Refactor and rename some functions

  jsilter

  committed
  b061207

• Update dropbox link to sample data

  jsilter

  committed
  f0825fd

Commits on Sep 6, 2024

• Tweak transform to use opencv directly (rather than indirectly via albumentations).

  Show description for 682fa67
  jsilter

  committed
  682fa67

Commits on Sep 5, 2024

• Refactor attention calculation

  Show description for c1f8c2a
  jsilter

  committed
  c1f8c2a

• Bugfix attention visualization.

  Show description for 0699737
  jsilter

  committed
  0699737

• Update default checkpoint URL to github release asset

  jsilter

  committed
  17fe74c

Commits on Aug 6, 2024

• Merge pull request #42 from reginabarzilaygroup/image-position-fix

  Show description for 1d33c64
  pgmikhael

  authored
  1d33c64

• Merge pull request #44 from reginabarzilaygroup/v1.5.0_dev

  Show description for 2b9c5fc
  pgmikhael

  authored
  2b9c5fc

Commits on Jul 31, 2024

• Download reference calibrator and calibrations in unit test if they don't already exist.

  jsilter

  committed
  552eda0

Commits on Jul 30, 2024

• Image position should be extracted into a list rather than single float of a single slice

  

  pgmikhael

  authored and

  jsilter

  committed
  fa292a6

• Allow setting CHECKPOINT_URL by environment variable.

  Show description for 3eda662
  jsilter

  committed
  3eda662

• Add additional regression test which downloads and processes a randomly selected group of NLST CT scans.

  jsilter

  committed
  ffc2416

• Add custom calibrator.

  Show description for 8318a9b
  jsilter

  committed
  8318a9b

• Bugfix sybil-predict

  Show description for 81a412c
  jsilter

  committed
  81a412c

Commits on Jul 26, 2024

• Cache the get_volume call from Serie.

  Show description for 0d85c12
  jsilter

  committed
  0d85c12

Commits on Jun 18, 2024

• Merge pull request #41 from reginabarzilaygroup/v1.4.0_dev

  Show description for a8c4369
  pgmikhael

  authored
  a8c4369

Commits on Jun 17, 2024

• Image position should be extracted into a list rather than single float of a single slice

  pgmikhael

  authored
  9f18c4a

Commits on Jun 12, 2024

• Change demo script name inference -> predict.

  jsilter

  committed
  44130b9

• Set num threads available to torch.

  Show description for 2bd7fcc
  jsilter

  committed
  2bd7fcc

• Tweaks to README

  Show description for 80aae8f
  jsilter

  committed
  80aae8f

Commits on Jun 4, 2024

• Merge pull request #39 from reginabarzilaygroup/v1.3.0_dev

  Show description for 3a5604a
  pgmikhael

  authored
  3a5604a

Commits on May 31, 2024

• Change setup.cfg so that we install torch+cuda based on platform_machine (architecture) not OS.

  jsilter

  committed
  bc5c599

Commits on May 28, 2024

• Fix demo to use new predict location. Also tweak imports.

  jsilter

  committed
  30b9ff3

Commits on May 24, 2024

• Create sybil-predict CLI

  Show description for 3526498
  jsilter

  committed
  3526498

Commits on May 23, 2024

• Merge pull request #38 from reginabarzilaygroup/v1.2.2_dev

  Show description for 1fd3d38
  pgmikhael

  authored
  1fd3d38

Commits on May 22, 2024

• Increment version number

  jsilter

  committed
  1e06b0e

• If device not specified, load model onto GPU with the most memory free.

  Show description for 2f2505c
  jsilter

  committed
  2f2505c

• Use a configured logger instead of print statement

  Show description for 4dabda6
  jsilter

  committed
  4dabda6

Commits on Apr 29, 2024

• Merge pull request #37 from reginabarzilaygroup/v1.2.1_dev

  Show description for 6618b4f
  jsilter

  authored
  6618b4f

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