From 1fc1354e920f94d0b9c391583f57d38a4788e73d Mon Sep 17 00:00:00 2001 From: Becky Sweger Date: Tue, 12 Nov 2024 14:12:01 -0500 Subject: [PATCH] Fix readthedocs build error --- docs/conf.py | 1 + src/cladetime/cladetime.py | 2 +- src/cladetime/sequence.py | 2 +- 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index f026308..6fbbf5f 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -142,6 +142,7 @@ ("py:class", "polars.dataframe.frame.DataFrame"), ("py:class", "polars.DataFrame"), ("py:class", "polars.lazyframe.frame.LazyFrame"), + ("py:class", "cladetime._clade.Clade"), ] diff --git a/src/cladetime/cladetime.py b/src/cladetime/cladetime.py index 49cc3e7..4f77a9b 100644 --- a/src/cladetime/cladetime.py +++ b/src/cladetime/cladetime.py @@ -214,7 +214,7 @@ def _get_config(self) -> Config: return config - def assign_clades(self, sequence_metadata: pl.LazyFrame, output_file: str | None = None) -> pl.DataFrame: + def assign_clades(self, sequence_metadata: pl.LazyFrame, output_file: str | None = None) -> Clade: """Assign clades to a specified set of sequences. For each sequence in a sequence file (.fasta), assign a Nextstrain diff --git a/src/cladetime/sequence.py b/src/cladetime/sequence.py index 59055f9..922e0fc 100644 --- a/src/cladetime/sequence.py +++ b/src/cladetime/sequence.py @@ -346,7 +346,7 @@ def get_metadata_ids(sequence_metadata: pl.DataFrame | pl.LazyFrame) -> set: ------- set A set of - :external+ncov:doc:`strains` + :external+ncov:doc:`strains` Raises ------