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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(are_detected)
export(calc_p_det_tmh_mut)
export(calculate_overlap)
export(check_haplotype)
export(check_ic50_prediction_tool)
export(check_ic50_prediction_tool_installation)
export(check_mhc_haplotype_name)
export(check_protein_sequences_length)
export(check_proteome_type)
export(check_target_name)
export(check_topology_prediction_tool)
export(convert_triplet_to_amino_acid)
export(correlate_to_hydrophobicity)
export(create_consensus_topology_conservation)
export(create_haplotypes_lut)
export(create_msa)
export(create_n_mers)
export(create_n_mers_tibble)
export(create_proteins_lut)
export(create_random_extreme_peptide)
export(create_random_hydrophobic_peptide)
export(create_random_peptide_with_hydrophobicity)
export(create_random_peptides)
export(create_random_tmh)
export(download_bergseng_et_al_2015_sup_1)
export(download_ic50s_lut)
export(explode)
export(get_aa_transition_matrix)
export(get_adjacent_sequences)
export(get_bbbq_theme)
export(get_bergseng_et_al_2015_sup_1)
export(get_bergseng_et_al_2015_sup_1_epitope_sequences)
export(get_bergseng_et_al_2015_sup_1_url)
export(get_covid_proteome_filename)
export(get_genetic_code)
export(get_hlas)
export(get_ic50_percentile_binder)
export(get_ic50_threshold)
export(get_ic50s_lut)
export(get_mhc1_allele_names)
export(get_mhc1_haplotypes)
export(get_mhc1_peptide_length)
export(get_mhc2_allele_names)
export(get_mhc2_haplotype_occurance)
export(get_mhc2_haplotypes)
export(get_mhc2_peptide_length)
export(get_mhc_allele_names)
export(get_mhc_haplotypes)
export(get_mhc_peptide_length)
export(get_non_tmh_peptides_from_elution)
export(get_proteome)
export(get_proteome_filename)
export(get_target_english_name)
export(get_target_names)
export(get_test_covid_proteome_filename)
export(get_test_human_proteome_filename)
export(get_test_myco_proteome_filename)
export(get_test_proteome_filename)
export(get_tmh_lengths)
export(get_tmh_peptides_from_elution)
export(get_topology)
export(get_topology_filename)
export(get_transition_rate)
export(get_transition_rates)
export(get_uniprot_id)
export(hyPref)
export(is_detected)
export(is_peptide)
export(nlapply)
export(predict_counts)
export(predict_counts_per_proteome)
export(predict_ic50s)
export(predict_n_coincidence_tmh_peptide)
export(prepare_data)
export(replace_nth_char)
export(simplify_haplotype_names)
importFrom(magrittr,"%>%")