packages.bib

@Manual{R-anytime,
  title = {anytime: Anything to POSIXct or Date Converter},
  author = {Dirk Eddelbuettel},
  year = {2020},
  note = {R package version 0.3.7},
  url = {http://dirk.eddelbuettel.com/code/anytime.html},
}

@Manual{R-av,
  title = {av: Working with Audio and Video in R},
  author = {Jeroen Ooms},
  year = {2020},
  note = {R package version 0.5.1},
  url = {https://CRAN.R-project.org/package=av},
}

@Manual{R-base,
  title = {R: A Language and Environment for Statistical Computing},
  author = {{R Core Team}},
  organization = {R Foundation for Statistical Computing},
  address = {Vienna, Austria},
  year = {2020},
  url = {https://www.R-project.org/},
}

@Manual{R-bookdown,
  title = {bookdown: Authoring Books and Technical Documents with R Markdown},
  author = {Yihui Xie},
  year = {2023},
  note = {R package version 0.34},
  url = {https://CRAN.R-project.org/package=bookdown},
}

@Manual{R-brnn,
  title = {brnn: Bayesian Regularization for Feed-Forward Neural Networks},
  author = {Paulino Perez Rodriguez and Daniel Gianola},
  year = {2020},
  note = {R package version 0.8},
  url = {https://CRAN.R-project.org/package=brnn},
}

@Manual{R-caret,
  title = {caret: Classification and Regression Training},
  author = {Max Kuhn},
  year = {2020},
  note = {R package version 6.0-86},
  url = {https://github.com/topepo/caret/},
}

@Manual{R-deepnet,
  title = {deepnet: deep learning toolkit in R},
  author = {Xiao Rong},
  year = {2014},
  note = {R package version 0.2},
  url = {https://CRAN.R-project.org/package=deepnet},
}

@Manual{R-doParallel,
  title = {doParallel: Foreach Parallel Adaptor for the parallel Package},
  author = {Microsoft Corporation and Steve Weston},
  year = {2019},
  note = {R package version 1.0.15},
  url = {https://CRAN.R-project.org/package=doParallel},
}

@Manual{R-dplyr,
  title = {dplyr: A Grammar of Data Manipulation},
  author = {Hadley Wickham and Romain François and Lionel {
             Henry} and Kirill Müller},
  year = {2020},
  note = {R package version 1.0.2},
  url = {https://CRAN.R-project.org/package=dplyr},
}

@Manual{R-DT,
  title = {DT: A Wrapper of the JavaScript Library DataTables},
  author = {Yihui Xie and Joe Cheng and Xianying Tan},
  year = {2020},
  note = {R package version 0.15},
  url = {https://github.com/rstudio/DT},
}

@Manual{R-elasticnet,
  title = {elasticnet: Elastic-Net for Sparse Estimation and Sparse PCA},
  author = {Hui Zou and Trevor Hastie},
  year = {2020},
  note = {R package version 1.3},
  url = {http://users.stat.umn.edu/~zouxx019/},
}

@Manual{R-forcats,
  title = {forcats: Tools for Working with Categorical Variables (Factors)},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 0.5.0},
  url = {https://CRAN.R-project.org/package=forcats},
}

@Manual{R-foreach,
  title = {foreach: Provides Foreach Looping Construct},
  author = {{Revolution Analytics} and Steve Weston}},
  year = {2020},
  note = {R package version 1.5.0},
  url = {https://github.com/RevolutionAnalytics/foreach},
}

@Manual{R-formattable,
  title = {formattable: Create Formattable Data Structures},
  author = {Kun Ren and Kenton Russell},
  year = {2016},
  note = {R package version 0.2.0.1},
  url = {https://CRAN.R-project.org/package=formattable},
}

@Manual{R-Formula,
  title = {Formula: Extended Model Formulas},
  author = {Achim Zeileis and Yves Croissant},
  year = {2020},
  note = {R package version 1.2-4},
  url = {https://CRAN.R-project.org/package=Formula},
}

@Manual{R-gganimate,
  title = {gganimate: A Grammar of Animated Graphics},
  author = {Thomas Lin Pedersen and David Robinson},
  year = {2020},
  note = {R package version 1.0.5},
  url = {https://CRAN.R-project.org/package=gganimate},
}

@Manual{R-ggforce,
  title = {ggforce: Accelerating ggplot2},
  author = {Thomas Lin Pedersen},
  year = {2020},
  note = {R package version 0.3.2},
  url = {https://CRAN.R-project.org/package=ggforce},
}

@Manual{R-ggplot2,
  title = {ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics},
  author = {Hadley Wickham and Winston Chang and Lionel Henry and Thomas Lin Pedersen and Kohske Takahashi and Claus Wilke and Kara Woo and Hiroaki Yutani and Dewey Dunnington},
  year = {2020},
  note = {R package version 3.3.2},
  url = {https://CRAN.R-project.org/package=ggplot2},
}

@Manual{R-ggpubr,
  title = {ggpubr: ggplot2 Based Publication Ready Plots},
  author = {Alboukadel Kassambara},
  year = {2020},
  note = {R package version 0.4.0},
  url = {https://rpkgs.datanovia.com/ggpubr/},
}

@Manual{R-ggthemes,
  title = {ggthemes: Extra Themes, Scales and Geoms for ggplot2},
  author = {Jeffrey B. Arnold},
  year = {2019},
  note = {R package version 4.2.0},
  url = {http://github.com/jrnold/ggthemes},
}

@Manual{R-ggTimeSeries,
  title = {ggTimeSeries: Time Series Visualisations Using the Grammar of Graphics},
  author = {Aditya Kothari},
  year = {2018},
  note = {R package version 1.0.1},
  url = {https://github.com/Ather-Energy/ggTimeSeries},
}

@Manual{R-gifski,
  title = {gifski: Highest Quality GIF Encoder},
  author = {Jeroen Ooms},
  year = {2018},
  note = {R package version 0.8.6},
  url = {https://CRAN.R-project.org/package=gifski},
}

@Manual{R-httr,
  title = {httr: Tools for Working with URLs and HTTP},
  author = {Hadley Wickham},
  year = {2020},
  note = {R package version 1.4.2},
  url = {https://CRAN.R-project.org/package=httr},
}

@Manual{R-hydroGOF,
  title = {hydroGOF: Goodness-of-Fit Functions for Comparison of Simulated and
Observed Hydrological Time Series},
  author = {{Mauricio Zambrano-Bigiarini}},
  year = {2020},
  note = {R package version 0.4-0},
  url = {https://github.com/hzambran/hydroGOF},
}

@Manual{R-iterators,
  title = {iterators: Provides Iterator Construct},
  author = {Revolution Analytics and Steve Weston},
  year = {2019},
  note = {R package version 1.0.12},
  url = {https://CRAN.R-project.org/package=iterators},
}

@Manual{R-jsonlite,
  title = {jsonlite: A Simple and Robust JSON Parser and Generator for R},
  author = {Jeroen Ooms},
  year = {2020},
  note = {R package version 1.7.1},
  url = {https://CRAN.R-project.org/package=jsonlite},
}

@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2022},
  note = {R package version 1.39},
  url = {https://yihui.org/knitr/},
}

@Manual{R-lars,
  title = {lars: Least Angle Regression, Lasso and Forward Stagewise},
  author = {Trevor Hastie and Brad Efron},
  year = {2013},
  note = {R package version 1.2},
  url = {http://www-stat.stanford.edu/~hastie/Papers/#LARS},
}

@Manual{R-lattice,
  title = {lattice: Trellis Graphics for R},
  author = {Deepayan Sarkar},
  year = {2018},
  note = {R package version 0.20-38},
  url = {http://lattice.r-forge.r-project.org/},
}

@Manual{R-magick,
  title = {magick: Advanced Graphics and Image-Processing in R},
  author = {Jeroen Ooms},
  year = {2020},
  note = {R package version 2.5.0},
  url = {https://CRAN.R-project.org/package=magick},
}

@Manual{R-modeltools,
  title = {modeltools: Tools and Classes for Statistical Models},
  author = {Torsten Hothorn and Friedrich Leisch and Achim Zeileis},
  year = {2020},
  note = {R package version 0.2-23},
  url = {https://CRAN.R-project.org/package=modeltools},
}

@Manual{R-mvtnorm,
  title = {mvtnorm: Multivariate Normal and t Distributions},
  author = {Alan Genz and Frank Bretz and Tetsuhisa Miwa and Xuefei Mi and Torsten Hothorn},
  year = {2020},
  note = {R package version 1.1-1},
  url = {http://mvtnorm.R-forge.R-project.org},
}

@Manual{R-pacman,
  title = {pacman: Package Management Tool},
  author = {Tyler Rinker and Dason Kurkiewicz},
  year = {2019},
  note = {R package version 0.5.1},
  url = {https://github.com/trinker/pacman},
}

@Manual{R-party,
  title = {party: A Laboratory for Recursive Partytioning},
  author = {Torsten Hothorn and Kurt Hornik and Carolin Strobl and Achim Zeileis},
  year = {2020},
  note = {R package version 1.3-5},
  url = {http://party.R-forge.R-project.org},
}

@Manual{R-pins,
  title = {pins: Pin, Discover and Share Resources},
  author = {Javier Luraschi},
  year = {2020},
  note = {R package version 0.4.0},
  url = {https://github.com/rstudio/pins},
}

@Manual{R-plotly,
  title = {plotly: Create Interactive Web Graphics via plotly.js},
  author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
  year = {2020},
  note = {R package version 4.9.2.1},
  url = {https://CRAN.R-project.org/package=plotly},
}

@Manual{R-pls,
  title = {pls: Partial Least Squares and Principal Component Regression},
  author = {Bjørn-Helge Mevik and Ron Wehrens and Kristian Hovde Liland},
  year = {2020},
  note = {R package version 2.7-3},
  url = {https://CRAN.R-project.org/package=pls},
}

@Manual{R-purrr,
  title = {purrr: Functional Programming Tools},
  author = {Lionel Henry and Hadley Wickham},
  year = {2020},
  note = {R package version 0.3.4},
  url = {https://CRAN.R-project.org/package=purrr},
}

@Manual{R-readr,
  title = {readr: Read Rectangular Text Data},
  author = {Hadley Wickham and Jim Hester and Romain Francois},
  year = {2018},
  note = {R package version 1.3.1},
  url = {https://CRAN.R-project.org/package=readr},
}

@Manual{R-sandwich,
  title = {sandwich: Robust Covariance Matrix Estimators},
  author = {Achim Zeileis and Thomas Lumley},
  year = {2020},
  note = {R package version 3.0-0},
  url = {http://sandwich.R-Forge.R-project.org/},
}

@Manual{R-skimr,
  title = {skimr: Compact and Flexible Summaries of Data},
  author = {Elin Waring and Michael Quinn and Amelia McNamara and Eduardo {Arino de la Rubia} and Hao Zhu and Shannon Ellis},
  year = {2020},
  note = {R package version 2.1},
  url = {https://CRAN.R-project.org/package=skimr},
}

@Manual{R-stringr,
  title = {stringr: Simple, Consistent Wrappers for Common String Operations},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.4.0},
  url = {https://CRAN.R-project.org/package=stringr},
}

@Manual{R-strucchange,
  title = {strucchange: Testing, Monitoring, and Dating Structural Changes},
  author = {Achim Zeileis and Friedrich Leisch and Kurt Hornik and Christian Kleiber},
  year = {2019},
  note = {R package version 1.5-2},
  url = {https://CRAN.R-project.org/package=strucchange},
}

@Manual{R-tibble,
  title = {tibble: Simple Data Frames},
  author = {Kirill Müller and Hadley Wickham},
  year = {2020},
  note = {R package version 3.0.4},
  url = {https://CRAN.R-project.org/package=tibble},
}

@Manual{R-tidyr,
  title = {tidyr: Tidy Messy Data},
  author = {Hadley Wickham and Lionel Henry},
  year = {2020},
  note = {R package version 1.1.1},
  url = {https://CRAN.R-project.org/package=tidyr},
}

@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the Tidyverse},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=tidyverse},
}

@Manual{R-transformr,
  title = {transformr: Polygon and Path Transformations},
  author = {Thomas Lin Pedersen},
  year = {2020},
  note = {R package version 0.1.3},
  url = {https://github.com/thomasp85/transformr},
}

@Manual{R-truncnorm,
  title = {truncnorm: Truncated Normal Distribution},
  author = {Olaf Mersmann and Heike Trautmann and Detlef Steuer and Björn Bornkamp},
  year = {2018},
  note = {R package version 1.0-8},
  url = {https://github.com/olafmersmann/truncnorm},
}

@Manual{R-tsibble,
  title = {tsibble: Tidy Temporal Data Frames and Tools},
  author = {Earo Wang and Di Cook and Rob Hyndman and Mitchell O'Hara-Wild},
  year = {2020},
  note = {R package version 0.9.2},
  url = {https://tsibble.tidyverts.org},
}

@Manual{R-xgboost,
  title = {xgboost: Extreme Gradient Boosting},
  author = {Tianqi Chen and Tong He and Michael Benesty and Vadim Khotilovich and Yuan Tang and Hyunsu Cho and Kailong Chen and Rory Mitchell and Ignacio Cano and Tianyi Zhou and Mu Li and Junyuan Xie and Min Lin and Yifeng Geng and Yutian Li},
  year = {2020},
  note = {R package version 1.0.0.2},
  url = {https://github.com/dmlc/xgboost},
}

@Manual{R-zoo,
  title = {zoo: S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)},
  author = {Achim Zeileis and Gabor Grothendieck and Jeffrey A. Ryan},
  year = {2020},
  note = {R package version 1.8-8},
  url = {http://zoo.R-Forge.R-project.org/},
}

@Book{bookdown2016,
  title = {bookdown: Authoring Books and Technical Documents with {R} Markdown},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2016},
  isbn = {978-1138700109},
  url = {https://bookdown.org/yihui/bookdown},
}

@Article{Formula2010,
  title = {Extended Model Formulas in {R}: Multiple Parts and Multiple Responses},
  author = {Achim Zeileis and Yves Croissant},
  journal = {Journal of Statistical Software},
  year = {2010},
  volume = {34},
  number = {1},
  pages = {1--13},
  doi = {10.18637/jss.v034.i01},
}

@Book{ggplot22016,
  author = {Hadley Wickham},
  title = {ggplot2: Elegant Graphics for Data Analysis},
  publisher = {Springer-Verlag New York},
  year = {2016},
  isbn = {978-3-319-24277-4},
  url = {https://ggplot2.tidyverse.org},
}

@Article{jsonlite2014,
  title = {The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects},
  author = {Jeroen Ooms},
  journal = {arXiv:1403.2805 [stat.CO]},
  year = {2014},
  url = {https://arxiv.org/abs/1403.2805},
}

@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}

@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}

@Book{lattice2008,
  title = {Lattice: Multivariate Data Visualization with R},
  author = {Deepayan Sarkar},
  publisher = {Springer},
  address = {New York},
  year = {2008},
  note = {ISBN 978-0-387-75968-5},
  url = {http://lmdvr.r-forge.r-project.org},
}

@Book{mvtnorm2009,
  title = {Computation of Multivariate Normal and t Probabilities},
  author = {Alan Genz and Frank Bretz},
  series = {Lecture Notes in Statistics},
  year = {2009},
  publisher = {Springer-Verlag},
  address = {Heidelberg},
  isbn = {978-3-642-01688-2},
}

@Manual{pacman2018,
  title = {{pacman}: {P}ackage Management for {R}},
  author = {Tyler W. Rinker and Dason Kurkiewicz},
  address = {Buffalo, New York},
  note = {version 0.5.0},
  year = {2018},
  url = {http://github.com/trinker/pacman},
}

@Article{party2006a,
  title = {Unbiased Recursive Partitioning: A Conditional Inference Framework},
  author = {Torsten Hothorn and Kurt Hornik and Achim Zeileis},
  journal = {Journal of Computational and Graphical Statistics},
  year = {2006},
  volume = {15},
  number = {3},
  pages = {651--674},
}

@Article{party2008a,
  title = {Model-Based Recursive Partitioning},
  author = {Achim Zeileis and Torsten Hothorn and Kurt Hornik},
  journal = {Journal of Computational and Graphical Statistics},
  year = {2008},
  volume = {17},
  number = {2},
  pages = {492--514},
}

@Article{party2006b,
  title = {Survival Ensembles},
  author = {Torsten Hothorn and Peter Buehlmann and Sandrine Dudoit and Annette Molinaro and Mark {Van Der Laan}},
  journal = {Biostatistics},
  year = {2006},
  volume = {7},
  number = {3},
  pages = {355--373},
}

@Article{party2007a,
  title = {Bias in Random Forest Variable Importance Measures: Illustrations, Sources and a Solution},
  author = {Carolin Strobl and Anne-Laure Boulesteix and Achim Zeileis and Torsten Hothorn},
  journal = {BMC Bioinformatics},
  year = {2007},
  volume = {8},
  number = {25},
  url = {http://www.biomedcentral.com/1471-2105/8/25},
}

@Article{party2008b,
  title = {Conditional Variable Importance for Random Forests},
  author = {Carolin Strobl and Anne-Laure Boulesteix and Thomas Kneib and Thomas Augustin and Achim Zeileis},
  journal = {BMC Bioinformatics},
  year = {2008},
  volume = {9},
  number = {307},
  url = {http://www.biomedcentral.com/1471-2105/9/307},
}

@Book{plotly2020,
  author = {Carson Sievert},
  title = {Interactive Web-Based Data Visualization with R, plotly, and shiny},
  publisher = {Chapman and Hall/CRC},
  year = {2020},
  isbn = {9781138331457},
  url = {https://plotly-r.com},
}

@Article{sandwich2020,
  title = {Various Versatile Variances: An Object-Oriented Implementation of Clustered Covariances in {R}},
  author = {Achim Zeileis and Susanne K\"oll and Nathaniel Graham},
  journal = {Journal of Statistical Software},
  year = {2020},
  volume = {95},
  number = {1},
  pages = {1--36},
  doi = {10.18637/jss.v095.i01},
}

@Article{sandwich2004,
  title = {Econometric Computing with {HC} and {HAC} Covariance Matrix Estimators},
  author = {Achim Zeileis},
  journal = {Journal of Statistical Software},
  year = {2004},
  volume = {11},
  number = {10},
  pages = {1--17},
  doi = {10.18637/jss.v011.i10},
}

@Article{sandwich2006,
  title = {Object-Oriented Computation of Sandwich Estimators},
  author = {Achim Zeileis},
  journal = {Journal of Statistical Software},
  year = {2006},
  volume = {16},
  number = {9},
  pages = {1--16},
  doi = {10.18637/jss.v016.i09},
}

@Article{strucchange2002,
  title = {strucchange: An R Package for Testing
                  for Structural Change in Linear Regression Models},
  author = {Achim Zeileis and Friedrich Leisch and Kurt Hornik and Christian Kleiber},
  journal = {Journal of Statistical Software},
  year = {2002},
  volume = {7},
  number = {2},
  pages = {1--38},
  url = {http://www.jstatsoft.org/v07/i02/},
}

@Article{strucchange2003,
  title = {Testing and Dating of Structural Changes in Practice},
  author = {Achim Zeileis and Christian Kleiber and Walter Kr\"amer and Kurt Hornik},
  journal = {Computational Statistics \& Data Analysis},
  year = {2003},
  volume = {44},
  pages = {109--123},
}

@Article{strucchange2006,
  title = {Implementing a Class of Structural Change Tests: An Econometric Computing Approach},
  author = {Achim Zeileis},
  journal = {Computational Statistics \& Data Analysis},
  year = {2006},
  volume = {50},
  pages = {2987--3008},
}

@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}

@Article{tsibble2020,
  author = {Earo Wang and Dianne Cook and Rob J Hyndman},
  title = {A new tidy data structure to support exploration and modeling of temporal data},
  journal = {Journal of Computational and Graphical Statistics},
  year = {2020},
  doi = {10.1080/10618600.2019.1695624},
  url = {https://doi.org/10.1080/10618600.2019.1695624},
}

@Article{zoo2005,
  title = {zoo: S3 Infrastructure for Regular and Irregular Time Series},
  author = {Achim Zeileis and Gabor Grothendieck},
  journal = {Journal of Statistical Software},
  year = {2005},
  volume = {14},
  number = {6},
  pages = {1--27},
  doi = {10.18637/jss.v014.i06},
}