diff --git a/man/calc_ofv_and_fim.Rd b/man/calc_ofv_and_fim.Rd index 81a38923..5bc9a28d 100644 --- a/man/calc_ofv_and_fim.Rd +++ b/man/calc_ofv_and_fim.Rd @@ -176,9 +176,6 @@ calc_ofv_and_fim(poped.db) Other E-family: \code{\link{ed_laplace_ofv}}, \code{\link{ed_mftot}}, \code{\link{evaluate.e.ofv.fim}} -Other evaluate_FIM: \code{\link{evaluate.e.ofv.fim}}, - \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} - Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{ed_laplace_ofv}}, \code{\link{ed_mftot}}, @@ -193,5 +190,8 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot6}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}}, \code{\link{ofv_fim}} + +Other evaluate_FIM: \code{\link{evaluate.e.ofv.fim}}, + \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} } diff --git a/man/create.poped.database.Rd b/man/create.poped.database.Rd index 74c2e5d5..2964eaf3 100644 --- a/man/create.poped.database.Rd +++ b/man/create.poped.database.Rd @@ -104,9 +104,9 @@ create.poped.database(popedInput = list(), hm2 = poped.choose(popedInput$hm2, 1e-05), hgd = poped.choose(popedInput$hgd, 1e-05), hle = poped.choose(popedInput$hle, 1e-05), - AbsTol = poped.choose(popedInput$AbsTol, 1e-05), - RelTol = poped.choose(popedInput$RelTol, 1e-05), - iDiffSolverMethod = poped.choose(popedInput$iDiffSolverMethod, 0), + AbsTol = poped.choose(popedInput$AbsTol, 1e-06), + RelTol = poped.choose(popedInput$RelTol, 1e-06), + iDiffSolverMethod = poped.choose(popedInput$iDiffSolverMethod, NULL), bUseMemorySolver = poped.choose(popedInput$bUseMemorySolver, FALSE), rsit = poped.choose(popedInput$rsit, 300), sgit = poped.choose(popedInput$sgit, 150), @@ -466,7 +466,7 @@ User defined data structure that, for example could be used to send in data to t \item{RelTol}{The relative tolerance for the diff equation solver} -\item{iDiffSolverMethod}{The diff equation solver method, 0, no other option} +\item{iDiffSolverMethod}{The diff equation solver method, NULL as default.} \item{bUseMemorySolver}{If the differential equation results should be stored in memory (1) or not (0)} diff --git a/man/evaluate.e.ofv.fim.Rd b/man/evaluate.e.ofv.fim.Rd index 8edc0892..2bc1b9eb 100644 --- a/man/evaluate.e.ofv.fim.Rd +++ b/man/evaluate.e.ofv.fim.Rd @@ -205,9 +205,6 @@ output$E_ofv Other E-family: \code{\link{calc_ofv_and_fim}}, \code{\link{ed_laplace_ofv}}, \code{\link{ed_mftot}} -Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, - \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} - Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{calc_ofv_and_fim}}, @@ -222,5 +219,8 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}}, \code{\link{ofv_fim}} + +Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, + \code{\link{evaluate.fim}}, \code{\link{ofv_fim}} } diff --git a/man/evaluate.fim.Rd b/man/evaluate.fim.Rd index d2bd542a..c7ca056b 100644 --- a/man/evaluate.fim.Rd +++ b/man/evaluate.fim.Rd @@ -144,14 +144,6 @@ get_rse(FIM.7,poped.db,fim.calc.type=7) } \seealso{ -Other evaluate_design: \code{\link{get_rse}}, - \code{\link{model_prediction}}, - \code{\link{plot_efficiency_of_windows}}, - \code{\link{plot_model_prediction}} - -Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, - \code{\link{evaluate.e.ofv.fim}}, \code{\link{ofv_fim}} - Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{calc_ofv_and_fim}}, @@ -167,5 +159,13 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}}, \code{\link{ofv_fim}} + +Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, + \code{\link{evaluate.e.ofv.fim}}, \code{\link{ofv_fim}} + +Other evaluate_design: \code{\link{get_rse}}, + \code{\link{model_prediction}}, + \code{\link{plot_efficiency_of_windows}}, + \code{\link{plot_model_prediction}} } diff --git a/man/feps.add.Rd b/man/feps.add.Rd index f3c96bed..eb6a1af2 100644 --- a/man/feps.add.Rd +++ b/man/feps.add.Rd @@ -76,6 +76,9 @@ get_rse(FIM,poped.db) } \seealso{ +Other RUV_models: \code{\link{feps.add.prop}}, + \code{\link{feps.prop}} + Other models: \code{\link{feps.add.prop}}, \code{\link{feps.prop}}, \code{\link{ff.PK.1.comp.oral.md.CL}}, @@ -84,8 +87,5 @@ Other models: \code{\link{feps.add.prop}}, \code{\link{ff.PK.1.comp.oral.sd.KE}}, \code{\link{ff.PKPD.1.comp.oral.md.CL.imax}}, \code{\link{ff.PKPD.1.comp.sd.CL.emax}} - -Other RUV_models: \code{\link{feps.add.prop}}, - \code{\link{feps.prop}} } diff --git a/man/feps.add.prop.Rd b/man/feps.add.prop.Rd index 36c67f7c..7aac44d9 100644 --- a/man/feps.add.prop.Rd +++ b/man/feps.add.prop.Rd @@ -81,6 +81,9 @@ get_rse(FIM,poped.db) } \seealso{ +Other RUV_models: \code{\link{feps.add}}, + \code{\link{feps.prop}} + Other models: \code{\link{feps.add}}, \code{\link{feps.prop}}, \code{\link{ff.PK.1.comp.oral.md.CL}}, @@ -89,8 +92,5 @@ Other models: \code{\link{feps.add}}, \code{\link{ff.PK.1.comp.oral.sd.KE}}, \code{\link{ff.PKPD.1.comp.oral.md.CL.imax}}, \code{\link{ff.PKPD.1.comp.sd.CL.emax}} - -Other RUV_models: \code{\link{feps.add}}, - \code{\link{feps.prop}} } diff --git a/man/feps.prop.Rd b/man/feps.prop.Rd index 3088a778..1e123a13 100644 --- a/man/feps.prop.Rd +++ b/man/feps.prop.Rd @@ -91,6 +91,9 @@ get_rse(FIM,poped.db) } \seealso{ +Other RUV_models: \code{\link{feps.add.prop}}, + \code{\link{feps.add}} + Other models: \code{\link{feps.add.prop}}, \code{\link{feps.add}}, \code{\link{ff.PK.1.comp.oral.md.CL}}, @@ -99,8 +102,5 @@ Other models: \code{\link{feps.add.prop}}, \code{\link{ff.PK.1.comp.oral.sd.KE}}, \code{\link{ff.PKPD.1.comp.oral.md.CL.imax}}, \code{\link{ff.PKPD.1.comp.sd.CL.emax}} - -Other RUV_models: \code{\link{feps.add.prop}}, - \code{\link{feps.add}} } diff --git a/man/model_prediction.Rd b/man/model_prediction.Rd index b057d31b..21fda7cd 100644 --- a/man/model_prediction.Rd +++ b/man/model_prediction.Rd @@ -216,12 +216,12 @@ model_prediction(design=design_4,DV=TRUE,dosing=dosing_4,model_num_points = c(10 model_minxt=c(20,20),model_maxxt=c(100,100)) } \seealso{ +Other Simulation: \code{\link{plot_efficiency_of_windows}}, + \code{\link{plot_model_prediction}} + Other evaluate_design: \code{\link{evaluate.fim}}, \code{\link{get_rse}}, \code{\link{plot_efficiency_of_windows}}, \code{\link{plot_model_prediction}} - -Other Simulation: \code{\link{plot_efficiency_of_windows}}, - \code{\link{plot_model_prediction}} } diff --git a/man/ofv_fim.Rd b/man/ofv_fim.Rd index ed5314d5..9d16c77b 100644 --- a/man/ofv_fim.Rd +++ b/man/ofv_fim.Rd @@ -105,10 +105,6 @@ ofv_fim(FIM,poped.db,ofv_calc_type=7) # 1/sum(get_rse(FIM,poped.db,use_percent=F } \seealso{ -Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, - \code{\link{evaluate.e.ofv.fim}}, - \code{\link{evaluate.fim}} - Other FIM: \code{\link{LinMatrixH}}, \code{\link{LinMatrixLH}}, \code{\link{LinMatrixL_occ}}, \code{\link{calc_ofv_and_fim}}, @@ -124,5 +120,9 @@ Other FIM: \code{\link{LinMatrixH}}, \code{\link{mftot6}}, \code{\link{mftot7}}, \code{\link{mftot}}, \code{\link{mf}}, \code{\link{ofv_criterion}} + +Other evaluate_FIM: \code{\link{calc_ofv_and_fim}}, + \code{\link{evaluate.e.ofv.fim}}, + \code{\link{evaluate.fim}} } diff --git a/man/plot_efficiency_of_windows.Rd b/man/plot_efficiency_of_windows.Rd index d751d762..de99af2a 100644 --- a/man/plot_efficiency_of_windows.Rd +++ b/man/plot_efficiency_of_windows.Rd @@ -137,13 +137,13 @@ plot_efficiency_of_windows(poped.db, } \seealso{ -Other evaluate_design: \code{\link{evaluate.fim}}, - \code{\link{get_rse}}, \code{\link{model_prediction}}, - \code{\link{plot_model_prediction}} - Other Graphics: \code{\link{plot_model_prediction}} Other Simulation: \code{\link{model_prediction}}, \code{\link{plot_model_prediction}} + +Other evaluate_design: \code{\link{evaluate.fim}}, + \code{\link{get_rse}}, \code{\link{model_prediction}}, + \code{\link{plot_model_prediction}} } diff --git a/man/plot_model_prediction.Rd b/man/plot_model_prediction.Rd index a852c0da..ff2feab3 100644 --- a/man/plot_model_prediction.Rd +++ b/man/plot_model_prediction.Rd @@ -128,13 +128,13 @@ plot_model_prediction(poped.db,IPRED=TRUE,DV=TRUE) } \seealso{ -Other evaluate_design: \code{\link{evaluate.fim}}, - \code{\link{get_rse}}, \code{\link{model_prediction}}, - \code{\link{plot_efficiency_of_windows}} - Other Graphics: \code{\link{plot_efficiency_of_windows}} Other Simulation: \code{\link{model_prediction}}, \code{\link{plot_efficiency_of_windows}} + +Other evaluate_design: \code{\link{evaluate.fim}}, + \code{\link{get_rse}}, \code{\link{model_prediction}}, + \code{\link{plot_efficiency_of_windows}} }