-
Notifications
You must be signed in to change notification settings - Fork 12
File formats
rioualen edited this page Apr 7, 2016
·
1 revision
NB Should be merged with glossary section?
A list of formats maintained by the UCSC.
- fastq: raw sequences + quality (more).
- sam: aligned reads (more).
- bam: compressed sam (more).
- cigar: alignment (more).
- bed: genomic coordinates (more).
- wig: coverage / density of some signal along genome (more).
- bedgraph: positions + density values (more).
- gff: genome feature file - annotations (more).
- gtf: variant of GFF, with two fields for annotation (more).
- gft2: Gene annotation (more).
- fastq: raw reads + quality scores (more).
- pileup: base-pair information at each chromosomal position (more).
- vcf: variant call format (more).