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rnabioco · Dec 8, 2023 · 7dac722 · 7dac722
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diff --git a/classes.html b/classes.html
@@ -107,7 +107,7 @@
   <!--radix_placeholder_rmarkdown_metadata-->
 
   <script type="text/json" id="radix-rmarkdown-metadata">
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+  {"type":"list","attributes":{"names":{"type":"character","attributes":{},"value":["title","site","listing"]}},"value":[{"type":"character","attributes":{},"value":["Practical Biological Data Analysis"]},{"type":"character","attributes":{},"value":["distill::distill_website"]},{"type":"list","attributes":{"names":{"type":"character","attributes":{},"value":["posts"]}},"value":[{"type":"character","attributes":{},"value":["2023-11-06-install-r","2023-11-27-class-1-introduction-to-the-r-statistical-programming-language","2023-11-27-class-2","2023-11-30-class-3-data-wrangling-with-the-tidyverse","2023-12-01-class-4-reshaping-data-into-a-tidy-format","2023-12-05-class-5-intro-to-ggplot2","2023-12-06-class-6-intro-to-ggplot2-part2","2023-12-07-class-7-integrated-data-analysis","2023-12-08-class-8-matricies","2023-12-11-class-9-clustering"]}]}]}
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@@ -2433,6 +2433,23 @@ <h2>Class 8: Introduction to matricies</h2>
 <p></p>
 </div>
 </a>
+<a href="posts/2023-12-11-class-9-clustering/" class="post-preview">
+<script class="post-metadata" type="text/json">{"categories":[]}</script>
+<div class="metadata">
+<div class="publishedDate">Dec. 8, 2023</div>
+<div class="dt-authors">
+<div class="dt-author">Kristen Wells</div>
+</div>
+</div>
+<div class="thumbnail">
+<img data-src="posts/2023-12-11-class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-44-1.png"/>
+</div>
+<div class="description">
+<h2>Class 9: Introduction to clustering and PCA</h2>
+<div class="dt-tags"></div>
+<p></p>
+</div>
+</a>
 </div>
 <div class="posts-more">
 <a href="#">More articles &raquo;</a>

diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-11-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-11-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-12-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-12-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-14-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-14-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-15-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-15-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-16-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-16-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-17-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-17-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-18-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-18-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-19-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-19-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-20-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-20-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-22-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-22-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-23-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-23-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-24-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-24-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-26-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-26-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-28-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-28-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-30-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-30-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-32-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-32-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-33-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-33-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-35-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-35-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-36-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-36-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-37-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-37-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-38-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-38-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-39-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-39-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-40-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-40-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-41-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-41-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-42-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-42-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-43-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-43-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-44-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-44-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-45-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-45-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-46-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-46-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-47-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-47-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-48-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-48-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-49-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-49-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-50-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-50-1.png
diff --git a/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-51-1.png b/...class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-51-1.png
diff --git a/...-class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-6-1.png b/...-class-9-clustering/class-9-clustering_files/figure-html5/unnamed-chunk-6-1.png
diff --git a/.../2023-12-11-class-9-clustering/class-9-clustering_files/header-attrs-2.14/header-attrs.js b/.../2023-12-11-class-9-clustering/class-9-clustering_files/header-attrs-2.14/header-attrs.js
@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});
diff --git a/posts/2023-12-11-class-9-clustering/img/Hierarchical-clustering-3-1.jpg b/posts/2023-12-11-class-9-clustering/img/Hierarchical-clustering-3-1.jpg
diff --git a/posts/2023-12-11-class-9-clustering/img/clustering1.jpg b/posts/2023-12-11-class-9-clustering/img/clustering1.jpg
diff --git a/posts/2023-12-11-class-9-clustering/img/dendrogram.jpg b/posts/2023-12-11-class-9-clustering/img/dendrogram.jpg
diff --git a/posts/2023-12-11-class-9-clustering/img/final_clustering.jpg b/posts/2023-12-11-class-9-clustering/img/final_clustering.jpg
diff --git a/posts/2023-12-11-class-9-clustering/img/unclustered.jpg b/posts/2023-12-11-class-9-clustering/img/unclustered.jpg