diff --git a/rules/cutadapt_star.snake b/rules/cutadapt_star.snake index 53d6992..44956f8 100644 --- a/rules/cutadapt_star.snake +++ b/rules/cutadapt_star.snake @@ -16,7 +16,7 @@ def _get_fq_paths(wildcards): """ Process complex barcodes into simple, if needed""" def _get_bc_cut(wildcards): try: - return CHEMISTRY[_get_config(wildcards.sample, "chemistry")]["bc_cut"] + return _get_config(wildcards.sample, "bc_cut") except KeyError: return ""