Update cutadapt_star.snake

correct interpretation of basename in _get_fq_paths
rnabioco · Oct 13, 2024 · a2ec835 · a2ec835
1 parent 146b095
commit a2ec835
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/rules/cutadapt_star.snake b/rules/cutadapt_star.snake
@@ -7,7 +7,7 @@ import pandas as pd
 
 """ Extract per-sample fastq paths """
 def _get_fq_paths(wildcards):
-    fqs = map(lambda x: os.path.join(DATA, x + "*R1*"), SAMPLES[wildcards.sample]["basename"])
+    fqs = map(lambda x: os.path.join(DATA, x + "*R1*"), [SAMPLES[wildcards.sample]["basename"]])
     fqs = map(lambda x: glob.glob(x), fqs)
     fqs = list(chain.from_iterable(fqs))