diff --git a/rules/cutadapt_star.snake b/rules/cutadapt_star.snake index cfaecb4..e51f10f 100644 --- a/rules/cutadapt_star.snake +++ b/rules/cutadapt_star.snake @@ -155,6 +155,7 @@ rule starsolo_R1: --runThreadN 12 \ --soloCBwhitelist {params.chemistry} \ --soloBarcodeMate 1 \ + --soloStrand Reverse \ --outFilterMultimapNmax 1 \ --outFilterMismatchNmax 999 \ --outFilterMismatchNoverReadLmax 0.2 \ @@ -241,6 +242,7 @@ rule starsolo_paired: --soloCBwhitelist {params.chemistry} \ {params.star_args_paired} \ --soloBarcodeMate 1 \ + --soloStrand Reverse \ --outFilterMultimapNmax 1 \ --outFilterMismatchNmax 999 \ --outFilterMismatchNoverReadLmax 0.2 \