CONFIG ERROR:Cannot access config file (/var/pipeline/ref/GRCm38.p6/GRCm38.bammatcher_docker.conf).

[geng-lee]

Hi,

I've tried running the MoCaSeq pipeline multiple times, but each time I get a CONFI G ERROR.
Could you help me about this problem ?

Thanks!

22526424.log

+--------------+
| CONFIG ERROR |
+--------------+
Cannot access config file (/var/pipeline/ref/GRCm38.p6/GRCm38.bammatcher_docker.conf).
It either does not exist or is not readable.

best,
jamie

[NikdAK]

Hi, did you install git LFS before pulling? Some larger files are not downloaded without LFS.

Anyways, you can find that file in the data/ folder in this repo, so you could manually download it.

[geng-lee]

I didn't notice if git LFS was installed, but I found that GRCm38.bammatcher_docker.conf is in my ref directory (ref/GRCm38.p6/GRCm38.bammatcher_docker.conf), not /var/pipeline/ref/GRCm38.p6/. How can I solve this problem？

Thanks!