diff --git a/.cruft.json b/.cruft.json index 1e5072a..49a633e 100644 --- a/.cruft.json +++ b/.cruft.json @@ -11,7 +11,7 @@ "project_repo_name": "rook", "project_readthedocs_name": "rook", "project_short_description": "A WPS service for roocs.", - "version": "0.9.0", + "version": "0.9.1", "open_source_license": "Apache Software License 2.0", "http_port": "5000", "_copy_without_render": [ diff --git a/CHANGES.rst b/CHANGES.rst index 6b77064..af0885a 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,6 +1,11 @@ Changes ******* +0.9.1 (2022-12-14) +================== + +* Updated to clisops 0.9.5 with patches for `subset_level_by_values`. + 0.9.0 (2022-09-27) ================== diff --git a/Dockerfile b/Dockerfile index 2e0da41..16f74e0 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,7 +1,7 @@ # vim:set ft=dockerfile: FROM continuumio/miniconda3 MAINTAINER https://github.com/roocs/rook -LABEL Description="rook WPS" Vendor="Birdhouse" Version="0.9.0" +LABEL Description="rook WPS" Vendor="Birdhouse" Version="0.9.1" # Update Debian system RUN apt-get update && apt-get install -y \ diff --git a/docs/source/conf.py b/docs/source/conf.py index 1a269cb..cea7fb5 100755 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -125,7 +125,7 @@ # The short X.Y version. # version = "0.1.0" # The full version, including alpha/beta/rc tags. -release = "0.9.0" +release = "0.9.1" # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/environment.yml b/environment.yml index 415949b..ec35368 100644 --- a/environment.yml +++ b/environment.yml @@ -18,7 +18,7 @@ dependencies: - netcdf4>=1.4 - bottleneck>=1.3.1,<1.4 - daops>=0.8.1,<0.9 -- clisops>=0.9.2,<0.10 +- clisops>=0.9.5,<0.10 - roocs-utils>=0.6.3,<0.7 # workflow - networkx diff --git a/requirements.txt b/requirements.txt index 77e7304..ca744b8 100644 --- a/requirements.txt +++ b/requirements.txt @@ -5,7 +5,7 @@ psutil # daops daops>=0.8.1,<0.9 #daops @ git+https://github.com/roocs/daops@fix-xarray#egg=daops -clisops>=0.9.2,<0.10 +clisops>=0.9.5,<0.10 #clisops @ git+https://github.com/roocs/clisops@master#egg=clisops roocs-utils>=0.6.3,<0.7 xarray>=0.20,<0.22 diff --git a/rook/__version__.py b/rook/__version__.py index a5dbd14..7e06bc1 100644 --- a/rook/__version__.py +++ b/rook/__version__.py @@ -6,4 +6,4 @@ __author__ = """Carsten Ehbrecht""" __email__ = "ehbrecht@dkrz.de" -__version__ = "0.9.0" +__version__ = "0.9.1" diff --git a/setup.cfg b/setup.cfg index 02a4415..302cd19 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.9.0 +current_version = 0.9.1 commit = True tag = True diff --git a/spec-list.txt b/spec-list.txt index d400dfe..eef8b29 100644 --- a/spec-list.txt +++ b/spec-list.txt @@ -3,32 +3,34 @@ # platform: linux-64 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.9.24-ha878542_0.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.12.7-ha878542_0.conda https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2 https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2 https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2 https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-hab24e00_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.36.1-hea4e1c9_2.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-12.1.0-hdcd56e2_16.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-12.1.0-ha89aaad_16.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.39-hcc3a1bd_1.conda +https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-12.2.0-h337968e_19.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-12.2.0-h46fd767_19.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/mpi-1.0-mpich.tar.bz2 https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.11-hd8ed1ab_0.tar.bz2 -https://conda.anaconda.org/conda-forge/noarch/tzdata-2022d-h191b570_0.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.10-3_cp310.conda +https://conda.anaconda.org/conda-forge/noarch/tzdata-2022g-h191b570_0.conda https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-12.1.0-h69a702a_16.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libgomp-12.1.0-h8d9b700_16.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-12.2.0-h69a702a_19.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libgomp-12.2.0-h65d4601_19.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-12.1.0-h8d9b700_16.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-12.2.0-h65d4601_19.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/aom-3.5.0-h27087fc_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.18.1-h7f98852_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/charls-2.3.4-h9c3ff4c_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/dav1d-1.0.0-h166bdaf_1.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/expat-2.4.9-h27087fc_0.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/expat-2.5.0-h27087fc_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/freexl-1.0.6-h166bdaf_1.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/geos-3.11.0-h27087fc_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/gettext-0.19.8.1-h27087fc_1009.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/geos-3.11.1-h27087fc_0.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.1-h36c2ea0_2.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h58526e2_1001.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/icu-70.1-h27087fc_0.tar.bz2 @@ -38,7 +40,7 @@ https://conda.anaconda.org/conda-forge/linux-64/jxrlib-1.1-h7f98852_2.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/lerc-4.0.0-h27087fc_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libaec-1.0.6-h9c3ff4c_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.0.9-h166bdaf_7.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.0.9-h166bdaf_8.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.14-h166bdaf_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2 @@ -49,18 +51,18 @@ https://conda.anaconda.org/conda-forge/linux-64/libspatialindex-1.9.3-h9c3ff4c_4 https://conda.anaconda.org/conda-forge/linux-64/libtool-2.4.6-h9c3ff4c_1008.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.32.1-h7f98852_1000.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.2.4-h166bdaf_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.12-h166bdaf_3.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h166bdaf_4.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libzopfli-1.0.3-h9c3ff4c_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.3-h9c3ff4c_1.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/mpich-4.0.3-h846660c_100.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.3-h27087fc_1.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/nspr-4.32-h9c3ff4c_1.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/openssl-3.0.5-h166bdaf_2.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/pcre-8.45-h9c3ff4c_0.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/nspr-4.35-h27087fc_0.conda +https://conda.anaconda.org/conda-forge/linux-64/openssl-3.0.7-h0b41bf4_1.conda https://conda.anaconda.org/conda-forge/linux-64/pixman-0.40.0-h36c2ea0_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/snappy-1.1.9-hbd366e4_1.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/tbb-2021.6.0-h924138e_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/tzcode-2022d-h166bdaf_0.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/qhull-2020.2-h4bd325d_2.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/snappy-1.1.9-hbd366e4_2.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/tzcode-2022g-h166bdaf_0.conda https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-h7f98852_1002.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/xorg-libice-1.0.10-h7f98852_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.9-h7f98852_0.tar.bz2 @@ -70,81 +72,101 @@ https://conda.anaconda.org/conda-forge/linux-64/xorg-xextproto-7.3.0-h7f98852_10 https://conda.anaconda.org/conda-forge/linux-64/xorg-xproto-7.0.31-h7f98852_1007.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h7f98852_2.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/zfp-1.0.0-h27087fc_1.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/zfp-1.0.0-h27087fc_3.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/zlib-ng-2.0.6-h166bdaf_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/hdf4-4.2.15-h9772cbc_4.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libavif-0.10.1-h5cdd6b5_2.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libavif-0.11.1-h5cdd6b5_0.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-16_linux64_openblas.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libbrotlidec-1.0.9-h166bdaf_7.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libbrotlienc-1.0.9-h166bdaf_7.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libbrotlidec-1.0.9-h166bdaf_8.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libbrotlienc-1.0.9-h166bdaf_8.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libllvm11-11.1.0-hf817b99_3.tar.bz2 +https://conda.anaconda.org/conda-forge/linux-64/libllvm11-11.1.0-he0ac6c6_5.tar.bz2 https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.47.0-hff17c54_1.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.38-h753d276_0.tar.bz2 -https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-hf730bdb_11.tar.bz2 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@@ -22,6 +22,10 @@ "c3s-cmip6.CMIP.MPI-M.MPI-ESM1-2-HR.historical.r1i1p1f1.Amon.tasmin.gn.v20190710" ) +C3S_CMIP6_MON_LEVEL_COLLECTION = ( + "c3s-cmip6.CMIP.CSIRO-ARCCSS.ACCESS-CM2.historical.r1i1p1f1.Amon.ta.gn.v20191108" +) + C3S_CMIP5_DAY_COLLECTION = ( "c3s-cmip5.output1.ICHEC.EC-EARTH.historical.day.atmos.day.r1i1p1.tas.latest" ) @@ -70,6 +74,7 @@ } ) + WF_C3S_CORDEX = json.dumps( { "doc": "subset on c3s-cordex", @@ -159,6 +164,19 @@ def test_smoke_execute_c3s_cmip6_subset(wps, tmp_path): assert "rlds" in ds.variables +def test_smoke_execute_c3s_cmip6_subset_level(wps, tmp_path): + inputs = [ + ("collection", C3S_CMIP6_MON_LEVEL_COLLECTION), + ("time", "1850/1850"), + ("time_components", "year:1850|month:jan"), + ("level", "1000"), + ] + urls = wps.execute("subset", inputs) + assert len(urls) == 1 + ds = open_dataset(urls[0], tmp_path) + assert "ta" in ds.variables + + def test_smoke_execute_c3s_cmip6_subset_metadata(wps, tmp_path): inputs = [ ("collection", C3S_CMIP6_MON_TASMIN_COLLECTION),