Update cookiecutter

.codacy.yml

@@ -1,8 +1,8 @@
 ---
 engines:
- pylint:
-   enabled: true
-   python_version: 3
+  pylint:
+    enabled: true
+    python_version: 3
 exclude_paths:
   - 'tests/**'
   - 'docs/source/conf.py'

.cruft.json

@@ -1,23 +1,28 @@
 {
-    "template": "https://github.com/bird-house/cookiecutter-birdhouse.git",
-    "commit": "be4eeb281ac2a027c2128c4ef84894ba559c8c24",
-    "context": {
-        "cookiecutter": {
-            "full_name": "Carsten Ehbrecht",
-            "email": "[email protected]",
-            "github_username": "roocs",
-            "project_name": "rook",
-            "project_slug": "rook",
-            "project_repo_name": "rook",
-            "project_readthedocs_name": "rook",
-            "project_short_description": "A WPS service for roocs.",
-            "version": "0.13.1",
-            "open_source_license": "Apache Software License 2.0",
-            "http_port": "5000",
-            "_copy_without_render": [
-                "{{cookiecutter.project_slug}}/templates/*.cfg"
-            ],
-            "_template": "https://github.com/bird-house/cookiecutter-birdhouse.git"
-        }
+  "template": "https://github.com/bird-house/cookiecutter-birdhouse.git",
+  "commit": "d25191ecc41c091d9b4a392f0ac89d70ff27db55",
+  "context": {
+    "cookiecutter": {
+      "full_name": "Carsten Ehbrecht",
+      "email": "[email protected]",
+      "github_username": "roocs",
+      "project_name": "rook",
+      "project_slug": "rook",
+      "project_repo_name": "rook",
+      "project_readthedocs_name": "rook",
+      "project_short_description": "A WPS service for roocs.",
+      "version": "0.13.1",
+      "open_source_license": "Apache Software License 2.0",
+      "http_port": "5000",
+      "use_pytest": "y",
+      "use_black": "n",
+      "create_author_file": "y",
+      "_copy_without_render": [
+        "{{cookiecutter.project_slug}}/templates/*.cfg"
+      ],
+      "__gh_slug": "roocs/rook",
+      "_template": "https://github.com/bird-house/cookiecutter-birdhouse.git"
     }
+  },
+  "checkout": null
 }

.github/workflows/docker-testing.yml

@@ -26,6 +26,11 @@ jobs:
           egress-policy: audit
       - name: Checkout Repository
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7
+      - name: Login to Docker Hub
+        uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567 # v3.3.0
+        with:
+          username: ${{ secrets.DOCKER_USERNAME }}
+          password: ${{ secrets.DOCKER_PASSWORD }}
       - name: Set up Docker Buildx
         uses: docker/setup-buildx-action@988b5a0280414f521da01fcc63a27aeeb4b104db # v3.6.1
       - name: Build Docker image (no push)

.github/workflows/main.yml

@@ -39,7 +39,7 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
           cache: pip
-      - name: Install flake8
+      - name: Install linting libraries
         run: |
           python -m pip install flake8
       - name: Run Lint 📦
@@ -52,7 +52,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11" ] # "3.12"
     defaults:
       run:
         shell: bash -l {0}
@@ -70,13 +70,13 @@ jobs:
           environment-file: environment.yml
           create-args: >-
             python=${{ matrix.python-version }}
+          micromamba-version: 1.5.10-0 # Pin micromamba version because of following issue: https://github.com/mamba-org/setup-micromamba/issues/225
       - name: Install requirements 📦
         run: |
-          python -m pip install -e .
-          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
-          if [ -f requirements_dev.txt ]; then pip install -r requirements_dev.txt; fi
+          python -m pip install -e ".[dev]"
       - name: Test with pytest ⚙️
-        run: make test
+        run: |
+          pytest -v -m "not slow and not online" tests
 
   docs:
     name: Docs (Python${{ matrix.python-version }})
@@ -103,9 +103,9 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
           cache: pip
-      - name: Install dev requirements 📦
+      - name: Install rook with dev requirements 📦
         run: |
-          python -m pip install -r requirements_dev.txt
+          python -m pip install -e ".[dev]"
       - name: Build Docs 📚
         run: |
           make docs

.gitignore

@@ -1,18 +1,18 @@
-# installer
-#Makefile
-
-# Docker
-#Dockerfile
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
 
 # PyWPS
-custom.cfg
-.custom.cfg
 *.pid
+.custom.cfg
+custom.cfg
+
+# C extensions
+*.so
 
 # Python / Extensions etc.
 *~
-*.mo
-*.so
 *.pyc
 *.pyo
 *.egg
@@ -21,26 +21,57 @@ custom.cfg
 *.bak
 __pycache__
 
-# Unit test / Coverage reports
+# Distribution / packaging
+*.egg-info/
+.Python
+.eggs/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+env/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+
+# Translations
+*.mo
+*.pot
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+*.cover
+*.lock
+*.log
 .cache
-.pytest_cache
 .coverage
-.tox
-nosetests.xml
-unit_tests/testdata.json
+.coverage.*
+.hypothesis/
+.pytest_cache/
+.tox/
+coverage.xml
 coverage/
+htmlcov/
+nosetests.xml
+testdata.json
+
 
 # R
 *.Rhistory
 
-# Eclipse / PyDev
-.project
-.pydevproject
-.settings
-
-# PyCharm
-*.idea
-
 # Kate
 *.kate-swp
 
@@ -62,26 +93,48 @@ downloads
 .mr.developer.cfg
 bootstrap-buildout.py
 bootstrap.py
-#generated by buildout
-
-*.pid
 
-# sphinx
-#docs/Makefile
-docs/make.bat
+# Sphinx documentation
+docs/Makefile
+docs/_build
+docs/_html/
 docs/doctrees/
-docs/html/
-docs/build/
+docs/make.bat
 docs/source/output-sanitize.cfg
 
 # External Sources
 #src/external
 src/
 
+# Django stuff:
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# PyBuilder
+target/
+
+# pyenv
+.python-version
+
+# Dask worker cache
+dask-worker-space/
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# dotenv
+.env
+
 # tests
-*.log
-*.lock
-testdata.json
 output_*.nc
 
 # IPython
@@ -95,3 +148,27 @@ output_*.nc
 
 # Merge conflict
 *.orig
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# VSCode
+.vscode/
+
+# Eclipse / PyDev
+.project
+.pydevproject
+.settings
+
+# PyCharm
+*.idea

.pre-commit-config.yaml

@@ -1,31 +1,25 @@
 default_language_version:
-    python: python3
+  python: python3
 
 repos:
--   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.2.0
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
     hooks:
-    -   id: trailing-whitespace
-        language_version: python3
+      - id: trailing-whitespace
         exclude: setup.cfg
-    -   id: end-of-file-fixer
-        language_version: python3
+      - id: end-of-file-fixer
         exclude: setup.cfg
-    -   id: check-yaml
-        language_version: python3
-    -   id: debug-statements
-        language_version: python3
--   repo: https://github.com/ambv/black
-    rev: 22.3.0
+      - id: check-yaml
+      - id: debug-statements
+  - repo: https://github.com/ambv/black
+    rev: 24.10.0
     hooks:
-    -   id: black
-        language_version: python3
-        args: ["--target-version", "py37"]
--   repo: https://github.com/pycqa/flake8
-    rev: 3.9.1
+      - id: black
+        args: ["--target-version", "py39"]
+  - repo: https://github.com/pycqa/flake8
+    rev: 7.1.1
     hooks:
-    -   id: flake8
-        language_version: python3
+      - id: flake8
         args: ['--config=setup.cfg']
 #-   repo: https://github.com/pre-commit/mirrors-autopep8
 #    rev: v1.4.4
@@ -36,22 +30,20 @@ repos:
 #    rev: 5.6.4
 #    hooks:
 #    -   id: isort
-#        language_version: python3
 #        args: ['--profile', 'black']
 #-   repo: https://github.com/pycqa/pydocstyle
 #    rev: 5.0.2
 #    hooks:
 #    -   id: pydocstyle
 #        args: ["--conventions=numpy"]
--   repo: https://github.com/asottile/pyupgrade
-    rev: v2.14.0
+  - repo: https://github.com/asottile/pyupgrade
+    rev: v3.17.0
     hooks:
-    -   id: pyupgrade
-        language_version: python3
--   repo: meta
+      - id: pyupgrade
+  - repo: meta
     hooks:
-    -   id: check-hooks-apply
-    -   id: check-useless-excludes
+      - id: check-hooks-apply
+      - id: check-useless-excludes
 # -   repo: https://github.com/kynan/nbstripout
 #     rev: 0.3.9
 #     hooks: