cannot execute estimate function

[charles-patrick-lavin]

Hello all - I have utilised the estimate function for over a year now.

As of today, I am unable to perform the estimate function, receiving the following error:

code

SAU_FB <- rfishbase::estimate(species_list = SAU_final_spp$scientific_name)

Error in purrr::map_chr():
ℹ In index: 1.
Caused by error:
! Result must be length 1, not 2.
Run rlang::last_trace() to see where the error occurred.

rlang::last_trace()
<error/purrr_error_indexed>
Error in purrr::map_chr():
ℹ In index: 1.
Caused by error:
! Result must be length 1, not 2.

---

Backtrace:
▆

1. ├─rfishbase::estimate(species_list = SAU_final_spp$scientific_name)
2. │ ├─fb_tbl(endpt, server, version, db) %>% fix_ids()
3. │ └─rfishbase::fb_tbl(endpt, server, version, db)
4. │ └─rfishbase::fb_import(server, version, db, tbl)
5. │ ├─rfishbase:::parse_prov(read_prov(server), version)
6. │ │ ├─base::withVisible(eval(mc, parent.frame()))
7. │ │ └─base::eval(mc, parent.frame())
8. │ │ └─base::eval(mc, parent.frame())
9. │ └─rfishbase (local) <fn>(prov = read_prov(server), version = version)
10. │ └─tibble::tibble(...)
11. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
12. │ └─rlang::eval_tidy(xs[[j]], mask)
13. ├─rfishbase:::fix_ids(.)
14. │ ├─"Speccode" %in% colnames(full_data)
15. │ └─base::colnames(full_data)
16. │ └─base::is.data.frame(x)
17. └─purrr::map_chr(meta, "encodingFormat", .default = NA)
18. └─purrr:::map_("character", .x, .f, ..., .progress = .progress)

19. ├─purrr:::with_indexed_errors(...)
    

20. │ └─base::withCallingHandlers(...)
    

21. └─purrr:::call_with_cleanup(...)
    

Run rlang::last_trace(drop = FALSE) to see 4 hidden frames.

here is the sessionInfo

sessionInfo()
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)

Matrix products: default

locale:
[1] LC_COLLATE=English_United Kingdom.utf8 LC_CTYPE=English_United Kingdom.utf8
[3] LC_MONETARY=English_United Kingdom.utf8 LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.utf8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] factoextra_1.0.7 FactoMineR_2.4 segmented_1.6-0 nlme_3.1-160 MASS_7.3-58.1 ggpmisc_0.5.0
[7] ggpp_0.4.5 ggpubr_0.4.0 corrplot_0.92 worrms_0.4.2 rfishbase_4.1.1 caTools_1.18.2
[13] car_3.1-0 carData_3.0-5 data.table_1.14.2 plyr_1.8.8 forcats_0.5.1 stringr_1.4.0
[19] dplyr_1.0.9 readr_2.1.2 tidyr_1.2.0 tibble_3.1.7 ggplot2_3.4.1 tidyverse_1.3.1
[25] purrr_1.0.1

loaded via a namespace (and not attached):
[1] bitops_1.0-7 fs_1.5.2 lubridate_1.9.2 progress_1.2.2 httr_1.4.5
[6] tools_4.2.2 backports_1.4.1 utf8_1.2.2 R6_2.5.1 DT_0.23
[11] DBI_1.1.3 colorspace_2.0-3 withr_2.5.0 tidyselect_1.2.0 prettyunits_1.1.1
[16] compiler_4.2.2 cli_3.6.1 rvest_1.0.2 quantreg_5.93 flashClust_1.01-2
[21] SparseM_1.81 xml2_1.3.3 scales_1.2.1 digest_0.6.29 pkgconfig_2.0.3
[26] htmltools_0.5.4 dbplyr_2.2.1 fastmap_1.1.0 htmlwidgets_1.5.4 rlang_1.1.0
[31] readxl_1.4.0 rstudioapi_0.14 generics_0.1.3 jsonlite_1.8.2 magrittr_2.0.3
[36] leaps_3.1 Matrix_1.5-1 Rcpp_1.0.10 munsell_0.5.0 fansi_1.0.3
[41] abind_1.4-5 lifecycle_1.0.3 scatterplot3d_0.3-41 stringi_1.7.6 grid_4.2.2
[46] ggrepel_0.9.1 crayon_1.5.1 lattice_0.20-45 haven_2.5.0 splines_4.2.2
[51] hms_1.1.1 pillar_1.8.1 ggsignif_0.6.3 reprex_2.0.1 glue_1.6.2
[56] modelr_0.1.8 vctrs_0.5.0 tzdb_0.3.0 MatrixModels_0.5-0 cellranger_1.1.0
[61] gtable_0.3.2 assertthat_0.2.1 cachem_1.0.6 broom_0.8.0 rstatix_0.7.0
[66] survival_3.4-0 memoise_2.0.1 cluster_2.1.4 timechange_0.2.0 ellipsis_0.3.2

Does anyone know how I can address this?
Many thanks for your time.

[cboettig]

apologies, we're in the middle of the new deploy and waiting for the next version to hit CRAN. can you try:

remotes::install_github("ropensci/rfishbase")

restart R and try again?

Thanks for the bug report!

[Nicolescm]

apologies, we're in the middle of the new deploy and waiting for the next version to hit CRAN. can you try:

remotes::install_github("ropensci/rfishbase")

restart R and try again?

Thanks for the bug report!

I had the same issue, but the reinstallation worked! Thanks

[charles-patrick-lavin]

Thank you all for your rapid response. Everything is working after reinstallation. Also many thanks for wonderful rfishbase!