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v0.3.1/api/engines/blast/index.html

@@ -1003,8 +1003,12 @@ <h3 id="run_blast"><code>run_blast</code><a class="headerlink" href="#run_blast"
 <div class="doc doc-object doc-function">
 
 
+<h2 id="camlhmp.engines.blast.run_blast" class="doc doc-heading">
+            <code class="highlight language-python"><span class="n">camlhmp</span><span class="o">.</span><span class="n">engines</span><span class="o">.</span><span class="n">blast</span><span class="o">.</span><span class="n">run_blast</span><span class="p">(</span><span class="n">engine</span><span class="p">,</span> <span class="n">subject</span><span class="p">,</span> <span class="n">query</span><span class="p">,</span> <span class="n">min_pident</span><span class="p">,</span> <span class="n">min_coverage</span><span class="p">)</span></code>
+
+<a href="#camlhmp.engines.blast.run_blast" class="headerlink" title="Permanent link">&para;</a></h2>
+
 
-<a id="camlhmp.engines.blast.run_blast"></a>
     <div class="doc doc-contents first">
 
       <p>Query sequences against a input subject using BLAST+.</p>
@@ -1204,8 +1208,12 @@ <h3 id="run_blast"><code>run_blast</code><a class="headerlink" href="#run_blast"
 <div class="doc doc-object doc-function">
 
 
+<h2 id="camlhmp.engines.blast.run_blastn" class="doc doc-heading">
+            <code class="highlight language-python"><span class="n">camlhmp</span><span class="o">.</span><span class="n">engines</span><span class="o">.</span><span class="n">blast</span><span class="o">.</span><span class="n">run_blastn</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">query</span><span class="p">,</span> <span class="n">min_pident</span><span class="p">,</span> <span class="n">min_coverage</span><span class="p">)</span></code>
+
+<a href="#camlhmp.engines.blast.run_blastn" class="headerlink" title="Permanent link">&para;</a></h2>
+
 
-<a id="camlhmp.engines.blast.run_blastn"></a>
     <div class="doc doc-contents first">
 
       <p>Query sequences against a input subject using BLASTN.</p>
@@ -1343,8 +1351,12 @@ <h3 id="run_blast"><code>run_blast</code><a class="headerlink" href="#run_blast"
 <div class="doc doc-object doc-function">
 
 
+<h2 id="camlhmp.engines.blast.run_tblastn" class="doc doc-heading">
+            <code class="highlight language-python"><span class="n">camlhmp</span><span class="o">.</span><span class="n">engines</span><span class="o">.</span><span class="n">blast</span><span class="o">.</span><span class="n">run_tblastn</span><span class="p">(</span><span class="n">subject</span><span class="p">,</span> <span class="n">query</span><span class="p">,</span> <span class="n">min_pident</span><span class="p">,</span> <span class="n">min_coverage</span><span class="p">)</span></code>
+
+<a href="#camlhmp.engines.blast.run_tblastn" class="headerlink" title="Permanent link">&para;</a></h2>
+
 
-<a id="camlhmp.engines.blast.run_tblastn"></a>
     <div class="doc doc-contents first">
 
       <p>Query sequences against a input subject using TBLASTN.</p>

v0.3.1/api/parsers/blast/index.html

@@ -942,8 +942,12 @@ <h2 id="get_blast_allele_hits"><code>get_blast_allele_hits</code><a class="heade
 <div class="doc doc-object doc-function">
 
 
+<h2 id="camlhmp.parsers.blast.get_blast_allele_hits" class="doc doc-heading">
+            <code class="highlight language-python"><span class="n">camlhmp</span><span class="o">.</span><span class="n">parsers</span><span class="o">.</span><span class="n">blast</span><span class="o">.</span><span class="n">get_blast_allele_hits</span><span class="p">(</span><span class="n">targets</span><span class="p">,</span> <span class="n">results</span><span class="p">,</span> <span class="n">min_pident</span><span class="p">,</span> <span class="n">min_coverage</span><span class="p">)</span></code>
+
+<a href="#camlhmp.parsers.blast.get_blast_allele_hits" class="headerlink" title="Permanent link">&para;</a></h2>
+
 
-<a id="camlhmp.parsers.blast.get_blast_allele_hits"></a>
     <div class="doc doc-contents first">
 
       <p>Find the allele hits in the BLAST results.</p>
@@ -1229,8 +1233,12 @@ <h2 id="get_blast_allele_hits"><code>get_blast_allele_hits</code><a class="heade
 <div class="doc doc-object doc-function">
 
 
+<h2 id="camlhmp.parsers.blast.get_blast_region_hits" class="doc doc-heading">
+            <code class="highlight language-python"><span class="n">camlhmp</span><span class="o">.</span><span class="n">parsers</span><span class="o">.</span><span class="n">blast</span><span class="o">.</span><span class="n">get_blast_region_hits</span><span class="p">(</span><span class="n">targets</span><span class="p">,</span> <span class="n">results</span><span class="p">,</span> <span class="n">min_pident</span><span class="p">,</span> <span class="n">min_coverage</span><span class="p">)</span></code>
+
+<a href="#camlhmp.parsers.blast.get_blast_region_hits" class="headerlink" title="Permanent link">&para;</a></h2>
+
 
-<a id="camlhmp.parsers.blast.get_blast_region_hits"></a>
     <div class="doc doc-contents first">
 
       <p>Aggregate multiple target hits for a region from the BLAST results.</p>
@@ -1468,8 +1476,12 @@ <h2 id="get_blast_allele_hits"><code>get_blast_allele_hits</code><a class="heade
 <div class="doc doc-object doc-function">
 
 
+<h2 id="camlhmp.parsers.blast.get_blast_target_hits" class="doc doc-heading">
+            <code class="highlight language-python"><span class="n">camlhmp</span><span class="o">.</span><span class="n">parsers</span><span class="o">.</span><span class="n">blast</span><span class="o">.</span><span class="n">get_blast_target_hits</span><span class="p">(</span><span class="n">targets</span><span class="p">,</span> <span class="n">results</span><span class="p">)</span></code>
+
+<a href="#camlhmp.parsers.blast.get_blast_target_hits" class="headerlink" title="Permanent link">&para;</a></h2>
+
 
-<a id="camlhmp.parsers.blast.get_blast_target_hits"></a>
     <div class="doc doc-contents first">
 
       <p>Find the target hits in the BLAST results.</p>