Merge branch 'main' of github.com:rs-station/laue-dials

.pre-commit-config.yaml

@@ -1,12 +1,12 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
     -   id: check-docstring-first
     -   id: check-yaml
     -   id: end-of-file-fixer
     -   id: trailing-whitespace
 -   repo: https://github.com/psf/black
-    rev: 23.1.0
+    rev: 24.1.1
     hooks:
     -   id: black

setup.py

@@ -2,6 +2,7 @@
     Setup file for laue_dials.
     Use setup.cfg to configure.
 """
+
 from setuptools import setup
 
 if __name__ == "__main__":

src/laue_dials/algorithms/outliers.py

@@ -1,6 +1,7 @@
 """
 Outlier rejection functions.
 """
+
 import numpy as np
 import scipy
 from dials.array_family import flex

src/laue_dials/command_line/integrate.py

@@ -17,7 +17,8 @@
 from cctbx import sgtbx
 from dials.array_family import flex
 from dials.util import show_mail_handle_errors
-from dials.util.options import ArgumentParser, reflections_and_experiments_from_files
+from dials.util.options import (ArgumentParser,
+                                reflections_and_experiments_from_files)
 
 from laue_dials.algorithms.integration import SegmentedImage
 from laue_dials.utils.version import laue_version

src/laue_dials/command_line/refine.py

@@ -19,11 +19,8 @@
 from dxtbx.model import ExperimentList
 from dxtbx.model.experiment_list import ExperimentListFactory
 
-from laue_dials.algorithms.laue import (
-    gen_beam_models,
-    remove_beam_models,
-    store_wavelengths,
-)
+from laue_dials.algorithms.laue import (gen_beam_models, remove_beam_models,
+                                        store_wavelengths)
 from laue_dials.utils.version import laue_version
 
 # Print laue-dials + DIALS versions