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Copy pathCapstarr_selected_TFs.tf
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Capstarr_selected_TFs.tf
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AC JUN_FOS
XX
ID JUN_FOS
XX
DE sATGAsTCAyyc
P0 A C G T
1 19885 28200 36669 12428
2 90233 16150 22086 1891
3 239 77 228 126719
4 101 219 123170 3778
5 126551 292 117 305
6 6751 41768 77395 1398
7 202 294 193 126584
8 2753 124383 88 33
9 127011 56 67 118
10 1670 47868 18264 60915
11 29868 45298 11779 36425
12 5816 8844 4880 4770
XX
CC program: transfac
CC matrix.nb: 1
CC accession: merge_21
CC AC: merge_21
CC id: merge_21
CC name: merge_21
CC version:
CC name: merge_21
CC description: sATGAsTCAyyc
CC transfac_consensus:
CC matrix.nb: 1
CC consensus.strict: gATGAgTCAtcc
CC consensus.strict.rc: GGATGACTCATC
CC consensus.IUPAC: sATGAsTCAyyc
CC consensus.IUPAC.rc: GRRTGASTCATS
CC consensus.regexp: [cg]ATGA[cg]TCA[ct][ct]c
CC consensus.regexp.rc: G[AG][AG]TGA[CG]TCAT[CG]
CC merged_AC: Hocomoco_M01506,Hocomoco_M01141,Hocomoco_M01282,Hocomoco_M01142,Jaspar_MA0478.1,Jaspar_MA0490.1,Jaspar_MA0841.1,Hocomoco_M01139,Hocomoco_M01140,Hocomoco_M01283,Jaspar_MA0477.1,Jaspar_MA0476.1,Jaspar_MA0491.1,Hocomoco_M01031,Hocomoco_M01284,Jaspar_MA0655.1
CC merge_nb: 16
CC merged_ID: SMRC1,FOSL2,JUNB,FOS,FOSL2,JUNB,NFE2,FOSB,FOSL1,JUND,FOSL1,FOS,JUND,BATF,JUN,JDP2
CC type: merge
CC merge_type: sum
XX
//
AC YY
XX
ID YY
XX
DE cAArATGGCggcc
P0 A C G T
1 1481 5456 1030 804
2 8927 83 358 214
3 8772 348 404 763
4 3778 1543 4270 551
5 10107 13 8 22
6 34 21 8 10117
7 18 0 10128 0
8 59 2 10051 42
9 1044 8197 103 870
10 1068 2027 5025 2065
11 1342 1145 6879 1050
12 1990 5970 751 1430
13 93 239 90 137
XX
CC program: transfac
CC matrix.nb: 1
CC accession: merge_47
CC AC: merge_47
CC id: merge_47
CC name: merge_47
CC version:
CC name: merge_47
CC description: cAArATGGCggcc
CC transfac_consensus:
CC matrix.nb: 1
CC consensus.strict: cAAgATGGCggcc
CC consensus.strict.rc: GGCCGCCATCTTG
CC consensus.IUPAC: cAArATGGCggcc
CC consensus.IUPAC.rc: GGCCGCCATYTTG
CC consensus.regexp: cAA[ag]ATGGCggcc
CC consensus.regexp.rc: GGCCGCCAT[CT]TTG
CC merge_nb: 4
CC type: merge
CC merge_type: sum
CC merged_AC: Hocomoco_M01588,Jaspar_MA0095.2,Hocomoco_M01589,Jaspar_MA0748.1
CC merged_ID: TYY1,YY1,TYY2,YY2
XX
//
AC REST
XX
ID REST
XX
DE tTCAGcACCayGGACAGckcCm
P0 A C G T
1 272 240 474 1104
2 67 368 180 1481
3 92 1801 69 134
4 1895 50 116 40
5 60 59 1972 12
6 166 1303 408 227
7 2036 20 32 17
8 14 2046 34 11
9 45 1927 39 94
10 1196 252 238 418
11 293 527 173 1110
12 49 12 2031 11
13 29 16 2054 4
14 1846 149 48 59
15 17 1689 299 94
16 2049 17 16 17
17 50 19 2008 16
18 250 1367 228 247
19 456 50 907 678
20 258 1267 412 152
21 234 1481 53 321
22 137 221 61 80
XX
CC program: transfac
CC matrix.nb: 1
CC accession: merge_100
CC AC: merge_100
CC id: merge_100
CC name: merge_100
CC version:
CC name: merge_100
CC description: tTCAGcACCayGGACAGckcCm
CC transfac_consensus:
CC matrix.nb: 1
CC consensus.strict: tTCAGcACCatGGACAGcgcCc
CC consensus.strict.rc: GGGCGCTGTCCATGGTGCTGAA
CC consensus.IUPAC: tTCAGcACCayGGACAGckcCm
CC consensus.IUPAC.rc: KGGMGCTGTCCRTGGTGCTGAA
CC consensus.regexp: tTCAGcACCa[ct]GGACAGc[gt]cC[ac]
CC consensus.regexp.rc: [GT]GG[AC]GCTGTCC[AG]TGGTGCTGAA
CC type: merge
CC merged_ID: REST,REST
CC merge_nb: 2
CC merged_AC: Hocomoco_M01481,Jaspar_MA0138.2
CC merge_type: sum
XX
//
AC SP
XX
ID SP
XX
DE ggggrgGGGGcGGGGcsrgsgs
P0 A C G T
1 596 679 1843 314
2 821 728 1815 483
3 630 644 2191 382
4 934 837 1696 380
5 1309 724 1287 527
6 784 503 2267 293
7 436 123 2758 530
8 682 42 3094 29
9 29 20 3763 35
10 29 52 3756 10
11 655 2605 89 498
12 85 51 3576 135
13 53 60 3553 181
14 611 205 2874 157
15 399 351 2936 161
16 531 2142 769 405
17 351 1674 1016 806
18 997 611 1472 767
19 755 848 1869 375
20 159 239 421 95
21 151 193 481 89
22 61 163 247 28
XX
CC program: transfac
CC matrix.nb: 1
CC accession: merge_149
CC AC: merge_149
CC id: merge_149
CC name: merge_149
CC version:
CC name: merge_149
CC description: ggggrgGGGGcGGGGcsrgsgs
CC transfac_consensus:
CC matrix.nb: 1
CC consensus.strict: ggggagGGGGcGGGGccggggg
CC consensus.strict.rc: CCCCCGGCCCCGCCCCCTCCCC
CC consensus.IUPAC: ggggrgGGGGcGGGGcsrgsgs
CC consensus.IUPAC.rc: SCSCYSGCCCCGCCCCCYCCCC
CC consensus.regexp: gggg[ag]gGGGGcGGGGc[cg][ag]g[cg]g[cg]
CC consensus.regexp.rc: [CG]C[CG]C[CT][CG]GCCCCGCCCCC[CT]CCCC
CC merged_ID: SP1,SP2,SP3
CC type: merge
CC merge_nb: 3
CC merged_AC: Hocomoco_M01524,Hocomoco_M01526,Hocomoco_M01527
CC merge_type: sum
XX
//
AC DDIT
XX
ID DDIT
XX
DE gggkATTGCAyyy
P0 A C G T
1 9 4 27 1
2 16 13 51 0
3 11 16 46 7
4 5 8 42 25
5 67 0 11 2
6 0 2 3 75
7 0 0 1 79
8 3 0 70 7
9 1 74 5 0
10 75 0 5 0
11 9 26 11 34
12 12 24 16 28
13 11 25 18 26
XX
CC program: transfac
CC matrix.nb: 1
CC accession: merge_125
CC AC: merge_125
CC id: merge_125
CC name: merge_125
CC version:
CC name: merge_125
CC description: gggkATTGCAyyy
CC transfac_consensus:
CC matrix.nb: 1
CC consensus.strict: ggggATTGCAttt
CC consensus.strict.rc: AAATGCAATCCCC
CC consensus.IUPAC: gggkATTGCAyyy
CC consensus.IUPAC.rc: RRRTGCAATMCCC
CC consensus.regexp: ggg[gt]ATTGCA[ct][ct][ct]
CC consensus.regexp.rc: [AG][AG][AG]TGCAAT[AC]CCC
CC merged_AC: Hocomoco_M01075,Jaspar_MA0019.1
CC merge_nb: 2
CC merge_type: sum
CC type: merge
CC merged_ID: DDIT3,Ddit3::Cebpa
XX
//
AC FCP2_GRHL1
XX
ID FCP2_GRHL1
XX
DE aAAACCGGTTtd
P0 A C G T
1 1345 472 247 427
2 2830 170 538 465
3 3066 9 136 94
4 3066 3 15 130
5 1 3066 2 0
6 376 3066 52 340
7 461 55 3066 207
8 1 10 3066 1
9 265 39 2 3066
10 173 246 32 3066
11 857 733 275 2743
12 685 289 655 862
XX
CC program: transfac
CC matrix.nb: 1
CC accession: merge_190
CC AC: merge_190
CC id: merge_190
CC name: merge_190
CC version:
CC name: merge_190
CC description: aAAACCGGTTtd
CC transfac_consensus:
CC matrix.nb: 1
CC consensus.strict: aAAACCGGTTtt
CC consensus.strict.rc: AAAACCGGTTTT
CC consensus.IUPAC: aAAACCGGTTtd
CC consensus.IUPAC.rc: HAAACCGGTTTT
CC consensus.regexp: aAAACCGGTTt[agt]
CC consensus.regexp.rc: [ACT]AAACCGGTTTT
CC merge_nb: 2
CC merge_type: sum
CC merged_ID: TFCP2,GRHL1
CC type: merge
CC merged_AC: Jaspar_MA0145.3,Jaspar_MA0647.1
XX
//
AC USF2
XX
ID USF2
XX
DE ggGTCACGTGrssvsssss
P0 A C G T
1 108 104 224 64
2 102 70 273 55
3 58 8 432 2
4 8 24 18 450
5 1 499 0 0
6 496 0 2 2
7 0 463 11 26
8 51 0 449 0
9 2 4 2 492
10 1 0 498 1
11 169 84 198 49
12 30 224 133 113
13 60 232 167 41
14 126 149 165 60
15 64 185 183 68
16 63 165 192 80
17 81 163 194 62
18 64 189 157 90
19 61 137 193 109
XX
CC program: transfac
CC matrix.nb: 1
CC accession: merge_361
CC AC: Hocomoco_M01593
CC id: Hocomoco_M01593
CC name: merge_361
CC version:
CC name: merge_361
CC description: ggGTCACGTGrssvsssss
CC transfac_consensus:
CC matrix.nb: 1
CC merged_AC: Hocomoco_M01593
CC merged_ID: USF2
CC merge_type: sum
CC type: merge
CC merge_nb: 1
XX
//