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Copy pathLexA.2nt_upstream-noorf-ovlp-2str.20.tf
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LexA.2nt_upstream-noorf-ovlp-2str.20.tf
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AC LexA.2nt_upstream-noorf-ovlp-2str.20_m1
XX
ID LexA
XX
DE wwaCTGtAtawAwaamCAGy
PO A C G T
1 15 4 3 12
2 12 4 1 17
3 25 2 5 2
4 0 33 0 1
5 0 0 0 34
6 0 0 34 0
7 1 4 6 23
8 28 3 1 2
9 0 5 4 25
10 26 1 5 2
11 14 2 6 12
12 28 0 2 4
13 16 6 1 11
14 20 3 4 7
15 14 7 4 9
16 17 13 1 3
17 0 33 1 0
18 33 0 0 1
19 3 0 31 0
20 2 9 5 18
XX
BA 34 sequences
XX
BS ATACTGTATATAAAAACAGT; site_0; 1; 20; 0; p
BS TTACTGTATATAAAACCAGT; site_1; 1; 20; 0; p
BS TTACTGTATAAATAAACAGT; site_2; 1; 20; 0; p
BS ATACTGGATAAAAAAACAGT; site_3; 1; 20; 0; p
BS CTACTGTATATAAAAACAGT; site_4; 1; 20; 0; p
BS ATACTGTATAAAATCACAGT; site_5; 1; 20; 0; p
BS CAACTGTATATAAATACAGT; site_6; 1; 20; 0; p
BS TCACTGTATAAATAAACAGC; site_7; 1; 20; 0; p
BS TAACTGTATATACACCCAGG; site_8; 1; 20; 0; p
BS TACCTGTATAAATAACCAGT; site_9; 1; 20; 0; p
BS ACACTGGATAGATAACCAGC; site_10; 1; 20; 0; p
BS ATGCTGGATAGATATCCAGC; site_11; 1; 20; 0; p
BS AATCTGTATATATACCCAGC; site_12; 1; 20; 0; p
BS ATACTGTACACAATAACAGT; site_13; 1; 20; 0; p
BS TTGCTGTATATACTCACAGC; site_14; 1; 20; 0; p
BS TTACTGTATGGATGTACAGT; site_15; 1; 20; 0; p
BS ATACTGTATAAACAGCCAAT; site_16; 1; 20; 0; p
BS TAACTGGATAATCATACAGT; site_17; 1; 20; 0; p
BS ATACTGTATGAGCATACAGT; site_18; 1; 20; 0; p
BS CAACTGGATAAAATTACAGG; site_19; 1; 20; 0; p
BS TGACTGTATAAAACCACAGC; site_20; 1; 20; 0; p
BS ATACTGTACGTATCGACAGT; site_21; 1; 20; 0; p
BS TTGCTGTATGGATTAACAGG; site_22; 1; 20; 0; p
BS ATACTGTATATTCATTCAGG; site_23; 1; 20; 0; p
BS TACCTGTATATATCATCAGT; site_24; 1; 20; 0; p
BS AAACTGCACAATAAACCAGA; site_25; 1; 20; 0; p
BS CAACTGATTAAAAACCCAGC; site_26; 1; 20; 0; p
BS TAACTGTCGATAAGCGCAGC; site_27; 1; 20; 0; p
BS GCACTGTATAAAAATCCTAT; site_28; 1; 20; 0; p
BS ACGCTGCCCTGAAAGCCAGG; site_29; 1; 20; 0; p
BS ATACTGTGCCATTTTTCAGT; site_30; 1; 20; 0; p
BS AAGCTGGCGTTGATGCCAGC; site_31; 1; 20; 0; p
BS GATCTGCTGGCAAGAACAGA; site_32; 1; 20; 0; p
BS GTATTGCAGAGAGGACGAAT; site_33; 1; 20; 0; p
CC program: meme
CC matrix.nb: 1
CC command: meme /Users/amedina/work_area/Regulon_matrix_eval/data/Sites_FNA_NR/LexA.19.fna -dna -mod oops -revcomp -text -nostatus -minw 20 -maxw 20 -bfile /Users/amedina/work_area/Regulon_matrix_eval/data/bg_freqs/2nt_upstream-noorf_Escherichia_coli_K12-ovlp-2str.meme_bg
CC sites: 34
CC meme.llr: 430
CC meme.E-value: 2.0e-088
CC matrix.nb: 1
CC sites: 34
CC consensus.strict: ataCTGtAtaaAaaacCAGt
CC consensus.strict.rc: ACTGGTTTTTTATACAGTAT
CC consensus.IUPAC: wwaCTGtAtawAwaamCAGy
CC consensus.IUPAC.rc: RCTGKTTWTWTATACAGTWW
CC consensus.regexp: [at][at]aCTGtAta[at]A[at]aa[ac]CAG[ct]
CC consensus.regexp.rc: [AG]CTG[GT]TT[AT]T[AT]TATACAGT[AT][AT]
XX
//