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Copy pathRSAT_peak-motifs_Oct4_matrices.tf
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RSAT_peak-motifs_Oct4_matrices.tf
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AC oligos_7nt_mkv5_m1
XX
ID oligos_7nt_mkv5_m1
XX
DE wwATGCAAATgw
P0 A C G T
1 421 135 205 292
2 272 240 144 397
3 963 30 20 40
4 26 5 27 995
5 34 17 950 52
6 24 906 35 88
7 928 13 19 93
8 845 49 69 90
9 1000 13 21 19
10 57 55 65 876
11 250 163 390 250
12 310 259 202 282
XX
CC program: feature
CC matrix.nb: 1
CC matrix.nb: 1
CC sites: 1053
CC consensus.strict: atATGCAAATga
CC consensus.strict.rc: TCATTTGCATAT
CC consensus.IUPAC: wwATGCAAATgw
CC consensus.IUPAC.rc: WCATTTGCATWW
CC consensus.regexp: [at][at]ATGCAAATg[at]
CC consensus.regexp.rc: [AT]CATTTGCAT[AT][AT]
XX
//
AC oligos_7nt_mkv5_m2
XX
ID oligos_7nt_mkv5_m2
XX
DE wwATGCTAAtt
P0 A C G T
1 524 218 323 435
2 436 311 312 441
3 1324 63 53 60
4 40 19 51 1390
5 33 38 1359 70
6 63 1272 68 97
7 285 37 17 1161
8 1291 58 103 48
9 1378 35 57 30
10 336 279 291 594
11 364 324 366 446
XX
CC program: feature
CC matrix.nb: 2
CC matrix.nb: 2
CC sites: 1500
CC consensus.strict: atATGCTAAtt
CC consensus.strict.rc: AATTAGCATAT
CC consensus.IUPAC: wwATGCTAAtt
CC consensus.IUPAC.rc: AATTAGCATWW
CC consensus.regexp: [at][at]ATGCTAAtt
CC consensus.regexp.rc: AATTAGCAT[AT][AT]
XX
//
AC oligos_7nt_mkv5_m3
XX
ID oligos_7nt_mkv5_m3
XX
DE ssCGCCCTCss
P0 A C G T
1 260 667 457 297
2 281 638 514 248
3 14 1629 22 16
4 49 23 1581 28
5 47 1474 88 72
6 68 1408 142 63
7 111 1451 61 58
8 139 142 173 1227
9 52 1527 64 38
10 291 510 475 405
11 244 599 502 336
XX
CC program: feature
CC matrix.nb: 3
CC matrix.nb: 3
CC sites: 1681
CC consensus.strict: ccCGCCCTCcc
CC consensus.strict.rc: GGGAGGGCGGG
CC consensus.IUPAC: ssCGCCCTCss
CC consensus.IUPAC.rc: SSGAGGGCGSS
CC consensus.regexp: [cg][cg]CGCCCTC[cg][cg]
CC consensus.regexp.rc: [CG][CG]GAGGGCG[CG][CG]
XX
//
AC oligos_7nt_mkv5_m4
XX
ID oligos_7nt_mkv5_m4
XX
DE rmATAACAATrr
P0 A C G T
1 188 106 260 101
2 177 317 72 89
3 608 17 14 16
4 43 19 26 567
5 518 44 55 38
6 600 14 16 25
7 33 533 41 48
8 610 14 11 20
9 614 12 14 15
10 63 19 20 553
11 208 95 249 103
12 192 146 192 125
XX
CC program: feature
CC matrix.nb: 4
CC matrix.nb: 4
CC sites: 655
CC consensus.strict: gcATAACAATga
CC consensus.strict.rc: TCATTGTTATGC
CC consensus.IUPAC: rmATAACAATrr
CC consensus.IUPAC.rc: YYATTGTTATKY
CC consensus.regexp: [ag][ac]ATAACAAT[ag][ag]
CC consensus.regexp.rc: [CT][CT]ATTGTTAT[GT][CT]
XX
//
AC local_words_7nt_m1
XX
ID local_words_7nt_m1
XX
DE sywTTgTtATGCAAAtdw
P0 A C G T
1 131 276 212 187
2 127 334 88 257
3 450 53 59 244
4 33 43 35 695
5 52 30 62 662
6 98 151 472 85
7 159 37 44 566
8 100 117 67 522
9 708 25 30 43
10 23 10 12 761
11 19 10 706 71
12 20 602 47 137
13 630 13 14 149
14 599 39 89 79
15 712 19 34 41
16 110 88 80 528
17 203 138 234 231
18 232 183 177 214
XX
CC program: feature
CC matrix.nb: 1
CC matrix.nb: 1
CC sites: 806
CC consensus.strict: ccaTTgTtATGCAAAtga
CC consensus.strict.rc: TCATTTGCATAACAATGG
CC consensus.IUPAC: sywTTgTtATGCAAAtdw
CC consensus.IUPAC.rc: WHATTTGCATAACAAWRS
CC consensus.regexp: [cg][ct][at]TTgTtATGCAAAt[agt][at]
CC consensus.regexp.rc: [AT][ACT]ATTTGCATAACAA[AT][AG][CG]
XX
//
AC local_words_7nt_m2
XX
ID local_words_7nt_m2
XX
DE whaTTTGCATaAcAAwrs
P0 A C G T
1 211 177 184 231
2 230 232 138 203
3 526 79 88 110
4 42 33 19 709
5 80 89 39 595
6 149 14 13 627
7 136 47 601 19
8 69 704 11 19
9 757 12 10 24
10 42 29 24 708
11 521 66 116 100
12 562 44 38 159
13 84 472 150 97
14 660 62 30 51
15 695 35 42 31
16 245 59 53 446
17 255 87 332 129
18 187 209 277 130
XX
CC program: feature
CC matrix.nb: 2
CC matrix.nb: 2
CC sites: 803
CC consensus.strict: tcaTTTGCATaAcAAtgg
CC consensus.strict.rc: CCATTGTTATGCAAATGA
CC consensus.IUPAC: whaTTTGCATaAcAAwrs
CC consensus.IUPAC.rc: SYWTTGTTATGCAAATDW
CC consensus.regexp: [at][act]aTTTGCATaAcAA[at][ag][cg]
CC consensus.regexp.rc: [CG][CT][AT]TTGTTATGCAAAT[AGT][AT]
XX
//
AC local_words_7nt_m3
XX
ID local_words_7nt_m3
XX
DE wsATATGCAAATgw
P0 A C G T
1 273 137 267 406
2 251 354 277 201
3 773 63 82 165
4 160 81 66 776
5 890 49 41 103
6 33 8 39 1003
7 49 20 959 55
8 39 890 46 108
9 935 14 31 103
10 797 62 82 142
11 993 25 28 37
12 90 72 96 825
13 260 183 376 264
14 340 237 206 300
XX
CC program: feature
CC matrix.nb: 3
CC matrix.nb: 3
CC sites: 1083
CC consensus.strict: tcATATGCAAATga
CC consensus.strict.rc: TCATTTGCATATGA
CC consensus.IUPAC: wsATATGCAAATgw
CC consensus.IUPAC.rc: WCATTTGCATATSW
CC consensus.regexp: [at][cg]ATATGCAAATg[at]
CC consensus.regexp.rc: [AT]CATTTGCATAT[CG][AT]
XX
//
AC local_words_7nt_m4
XX
ID local_words_7nt_m4
XX
DE kyaTTgTTaTGCAtAAcAAtrm
P0 A C G T
1 47 47 48 49
2 43 60 38 50
3 116 30 14 31
4 13 15 16 147
5 16 11 18 146
6 27 28 114 22
7 35 15 10 131
8 13 25 3 150
9 123 23 7 38
10 12 9 3 167
11 14 6 161 10
12 10 161 6 14
13 167 3 9 12
14 38 7 23 123
15 151 3 25 12
16 132 9 15 35
17 22 114 28 27
18 146 19 11 15
19 147 16 15 13
20 31 14 30 116
21 49 38 60 44
22 49 48 47 47
XX
CC program: feature
CC matrix.nb: 4
CC matrix.nb: 4
CC sites: 191
CC consensus.strict: tcaTTgTTaTGCAtAAcAAtga
CC consensus.strict.rc: TCATTGTTATGCATAACAATGA
CC consensus.IUPAC: kyaTTgTTaTGCAtAAcAAtrm
CC consensus.IUPAC.rc: KYATTGTTATGCATAACAATRM
CC consensus.regexp: [gt][ct]aTTgTTaTGCAtAAcAAt[ag][ac]
CC consensus.regexp.rc: [GT][CT]ATTGTTATGCATAACAAT[AG][AC]
XX
//
AC positions_7nt_m1
XX
ID positions_7nt_m1
XX
DE wyaTtTgCATATGcAaAtrw
P0 A C G T
1 97 43 67 78
2 48 98 58 81
3 177 50 27 31
4 22 29 7 227
5 55 23 28 179
6 18 20 10 237
7 35 6 193 51
8 21 225 24 15
9 262 5 4 14
10 21 13 13 238
11 238 13 13 21
12 14 4 5 262
13 15 24 225 21
14 50 193 6 36
15 237 10 20 18
16 179 28 23 55
17 226 7 30 22
18 31 27 50 177
19 80 58 98 49
20 78 67 43 97
XX
CC program: feature
CC matrix.nb: 1
CC matrix.nb: 1
CC sites: 285
CC consensus.strict: acaTtTgCATATGcAaAtgt
CC consensus.strict.rc: ACATTTGCATATGCAAATGT
CC consensus.IUPAC: wyaTtTgCATATGcAaAtrw
CC consensus.IUPAC.rc: WYATTTGCATATGCAAATRW
CC consensus.regexp: [at][ct]aTtTgCATATGcAaAt[ag][at]
CC consensus.regexp.rc: [AT][CT]ATTTGCATATGCAAAT[AG][AT]
XX
//
AC positions_7nt_m2
XX
ID positions_7nt_m2
XX
DE whaTTTGCATaAcAAwrs
P0 A C G T
1 211 167 179 224
2 217 229 136 199
3 519 76 84 102
4 38 34 19 690
5 80 84 39 578
6 148 14 13 606
7 133 45 584 19
8 65 686 10 20
9 737 13 11 20
10 42 25 20 694
11 503 66 113 99
12 543 40 36 162
13 78 458 147 98
14 640 61 27 53
15 676 34 41 30
16 229 52 47 453
17 252 85 320 124
18 179 207 267 128
XX
CC program: feature
CC matrix.nb: 2
CC matrix.nb: 2
CC sites: 781
CC consensus.strict: tcaTTTGCATaAcAAtgg
CC consensus.strict.rc: CCATTGTTATGCAAATGA
CC consensus.IUPAC: whaTTTGCATaAcAAwrs
CC consensus.IUPAC.rc: SYWTTGTTATGCAAATDW
CC consensus.regexp: [at][act]aTTTGCATaAcAA[at][ag][cg]
CC consensus.regexp.rc: [CG][CT][AT]TTGTTATGCAAAT[AGT][AT]
XX
//
AC positions_7nt_m4
XX
ID positions_7nt_m4
XX
DE yaTATGCGCATAtr
P0 A C G T
1 73 127 93 104
2 134 90 94 79
3 19 45 7 326
4 331 22 31 13
5 9 5 15 368
6 11 17 334 35
7 33 288 17 59
8 58 17 289 33
9 35 334 17 11
10 368 15 5 9
11 13 31 22 331
12 326 7 45 19
13 79 94 90 134
14 104 94 127 72
XX
CC program: feature
CC matrix.nb: 4
CC matrix.nb: 4
CC sites: 397
CC consensus.strict: caTATGCGCATAtg
CC consensus.strict.rc: CATATGCGCATATG
CC consensus.IUPAC: yaTATGCGCATAtr
CC consensus.IUPAC.rc: YATATGCGCATATR
CC consensus.regexp: [ct]aTATGCGCATAt[ag]
CC consensus.regexp.rc: [CT]ATATGCGCATAT[AG]
XX
//
AC oligos_8nt_mkv6_m1
XX
ID oligos_8nt_mkv6_m1
XX
DE sgCGCAGGCGss
P0 A C G T
1 136 381 304 235
2 199 218 525 114
3 25 959 48 24
4 27 35 974 20
5 20 960 56 20
6 797 58 170 31
7 17 182 729 128
8 22 58 956 20
9 26 966 32 32
10 34 49 941 32
11 133 486 264 173
12 234 288 392 142
XX
CC program: feature
CC matrix.nb: 1
CC matrix.nb: 1
CC sites: 1056
CC consensus.strict: cgCGCAGGCGcg
CC consensus.strict.rc: CGCGCCTGCGCG
CC consensus.IUPAC: sgCGCAGGCGss
CC consensus.IUPAC.rc: SSCGCCTGCGCS
CC consensus.regexp: [cg]gCGCAGGCG[cg][cg]
CC consensus.regexp.rc: [CG][CG]CGCCTGCGC[CG]
XX
//
AC oligos_8nt_mkv6_m2
XX
ID oligos_8nt_mkv6_m2
XX
DE ygCGCatGCGcr
P0 A C G T
1 94 286 146 233
2 166 85 456 52
3 21 700 19 19
4 30 11 708 10
5 3 737 7 12
6 482 77 183 17
7 17 182 78 482
8 12 7 737 3
9 10 708 11 30
10 19 19 700 21
11 52 455 86 166
12 233 146 285 95
XX
CC program: feature
CC matrix.nb: 2
CC matrix.nb: 2
CC sites: 759
CC consensus.strict: cgCGCatGCGcg
CC consensus.strict.rc: CGCGCATGCGCG
CC consensus.IUPAC: ygCGCatGCGcr
CC consensus.IUPAC.rc: YGCGCATGCGCR
CC consensus.regexp: [ct]gCGCatGCGc[ag]
CC consensus.regexp.rc: [CT]GCGCATGCGC[AG]
XX
//
AC oligos_8nt_mkv6_m3
XX
ID oligos_8nt_mkv6_m3
XX
DE ssCGCTTCCGss
P0 A C G T
1 102 246 197 129
2 99 219 243 113
3 26 593 38 17
4 67 22 549 36
5 7 631 21 15
6 8 53 76 537
7 17 53 37 567
8 16 594 53 11
9 27 596 33 18
10 13 23 617 21
11 75 284 234 81
12 115 206 219 134
XX
CC program: feature
CC matrix.nb: 3
CC matrix.nb: 3
CC sites: 674
CC consensus.strict: cgCGCTTCCGcg
CC consensus.strict.rc: CGCGGAAGCGCG
CC consensus.IUPAC: ssCGCTTCCGss
CC consensus.IUPAC.rc: SSCGGAAGCGSS
CC consensus.regexp: [cg][cg]CGCTTCCG[cg][cg]
CC consensus.regexp.rc: [CG][CG]CGGAAGCG[CG][CG]
XX
//
AC oligos_8nt_mkv6_m4
XX
ID oligos_8nt_mkv6_m4
XX
DE ssCGCAGCCGss
P0 A C G T
1 117 333 280 151
2 126 291 343 121
3 29 790 31 31
4 21 46 790 24
5 20 804 35 22
6 655 130 63 33
7 6 55 808 12
8 22 724 115 20
9 39 763 44 35
10 28 35 789 29
11 111 424 241 105
12 193 273 295 120
XX
CC program: feature
CC matrix.nb: 4
CC matrix.nb: 4
CC sites: 881
CC consensus.strict: cgCGCAGCCGcg
CC consensus.strict.rc: CGCGGCTGCGCG
CC consensus.IUPAC: ssCGCAGCCGss
CC consensus.IUPAC.rc: SSCGGCTGCGSS
CC consensus.regexp: [cg][cg]CGCAGCCG[cg][cg]
CC consensus.regexp.rc: [CG][CG]CGGCTGCG[CG][CG]
XX
//
AC local_words_8nt_m1
XX
ID local_words_8nt_m1
XX
DE sywTTgTTATGCAAAtdw
P0 A C G T
1 120 260 189 175
2 118 308 83 235
3 393 52 60 239
4 24 42 32 646
5 48 23 57 616
6 89 134 452 69
7 148 37 39 520
8 83 101 49 511
9 647 25 30 42
10 23 9 12 700
11 18 9 652 65
12 17 563 42 122
13 584 12 12 136
14 553 34 81 76
15 652 21 31 40
16 95 76 67 506
17 187 131 216 210
18 218 168 158 200
XX
CC program: feature
CC matrix.nb: 1
CC matrix.nb: 1
CC sites: 744
CC consensus.strict: ccaTTgTTATGCAAAtga
CC consensus.strict.rc: TCATTTGCATAACAATGG
CC consensus.IUPAC: sywTTgTTATGCAAAtdw
CC consensus.IUPAC.rc: WHATTTGCATAACAAWRS
CC consensus.regexp: [cg][ct][at]TTgTTATGCAAAt[agt][at]
CC consensus.regexp.rc: [AT][ACT]ATTTGCATAACAA[AT][AG][CG]
XX
//
AC local_words_8nt_m2
XX
ID local_words_8nt_m2
XX
DE whATTTGCATAAcAAwrs
P0 A C G T
1 199 160 167 217
2 210 218 128 187
3 506 67 76 94
4 40 31 21 651
5 77 81 34 551
6 136 12 11 584
7 123 42 561 17
8 63 653 9 18
9 699 12 9 23
10 42 30 26 645
11 508 49 101 85
12 521 39 37 146
13 68 453 133 89
14 617 56 22 48
15 645 32 42 24
16 239 60 53 391
17 237 83 306 117
18 175 189 259 120
XX
CC program: feature
CC matrix.nb: 2
CC matrix.nb: 2
CC sites: 743
CC consensus.strict: tcATTTGCATAAcAAtgg
CC consensus.strict.rc: CCATTGTTATGCAAATGA
CC consensus.IUPAC: whATTTGCATAAcAAwrs
CC consensus.IUPAC.rc: SYWTTGTTATGCAAATDW
CC consensus.regexp: [at][act]ATTTGCATAAcAA[at][ag][cg]
CC consensus.regexp.rc: [CG][CT][AT]TTGTTATGCAAAT[AGT][AT]
XX
//
AC local_words_8nt_m3
XX
ID local_words_8nt_m3
XX
DE dmATATGCATrw
P0 A C G T
1 265 140 300 239
2 254 348 146 196
3 833 32 28 51
4 44 33 23 844
5 665 69 47 163
6 17 30 11 886
7 72 10 800 62
8 39 833 12 60
9 896 6 26 16
10 79 41 32 792
11 406 99 253 186
12 242 187 143 372
XX
CC program: feature
CC matrix.nb: 3
CC matrix.nb: 3
CC sites: 944
CC consensus.strict: gcATATGCATat
CC consensus.strict.rc: ATATGCATATGC
CC consensus.IUPAC: dmATATGCATrw
CC consensus.IUPAC.rc: WYATGCATATKH
CC consensus.regexp: [agt][ac]ATATGCAT[ag][at]
CC consensus.regexp.rc: [AT][CT]ATGCATAT[GT][ACT]
XX
//
AC positions_8nt_m1
XX
ID positions_8nt_m1
XX
DE syaTTgTtATGCAAATgwm
P0 A C G T
1 75 202 140 131
2 79 237 53 179
3 360 30 29 129
4 10 28 23 487
5 34 10 31 473
6 51 84 365 48
7 96 25 27 400
8 63 82 46 357
9 474 17 20 37
10 15 5 9 519
11 12 6 480 50
12 14 414 29 91
13 427 11 6 104
14 396 22 77 53
15 485 14 22 27
16 60 47 40 401
17 96 79 256 117
18 166 117 118 147
19 165 140 117 126
XX
CC program: feature
CC matrix.nb: 1
CC matrix.nb: 1
CC sites: 548
CC consensus.strict: ccaTTgTtATGCAAATgaa
CC consensus.strict.rc: TTCATTTGCATAACAATGG
CC consensus.IUPAC: syaTTgTtATGCAAATgwm
CC consensus.IUPAC.rc: KWCATTTGCATAACAATRS
CC consensus.regexp: [cg][ct]aTTgTtATGCAAATg[at][ac]
CC consensus.regexp.rc: [GT][AT]CATTTGCATAACAAT[AG][CG]
XX
//
AC positions_8nt_m2
XX
ID positions_8nt_m2
XX
DE yayATGCATATGCATrtr
P0 A C G T
1 99 158 118 130
2 189 81 113 122
3 69 219 41 176
4 377 37 32 59
5 21 27 16 441
6 49 23 368 65
7 74 371 18 42
8 453 9 20 23
9 44 35 12 414
10 414 12 35 44
11 23 20 9 453
12 42 18 371 74
13 65 368 23 49
14 441 16 27 21
15 59 32 38 376
16 177 41 218 69
17 121 113 82 189
18 131 118 157 99
XX
CC program: feature
CC matrix.nb: 2
CC matrix.nb: 2
CC sites: 505
CC consensus.strict: cacATGCATATGCATgtg
CC consensus.strict.rc: CACATGCATATGCATGTG
CC consensus.IUPAC: yayATGCATATGCATrtr
CC consensus.IUPAC.rc: YAYATGCATATGCATRTR
CC consensus.regexp: [ct]a[ct]ATGCATATGCAT[ag]t[ag]
CC consensus.regexp.rc: [CT]A[CT]ATGCATATGCAT[AG]T[AG]
XX
//
AC positions_8nt_m3
XX
ID positions_8nt_m3
XX
DE gcaTATGCgCATAtgc
P0 A C G T
1 68 65 124 78
2 66 114 73 82
3 198 34 58 45
4 16 44 6 269
5 292 10 23 10
6 7 7 7 314
7 21 18 265 31
8 23 229 17 66
9 67 17 228 23
10 32 264 18 21
11 314 7 7 7
12 10 23 10 292
13 268 6 45 16
14 45 58 34 198
15 83 73 113 66
16 77 124 66 68
XX
CC program: feature
CC matrix.nb: 3
CC matrix.nb: 3
CC sites: 335
CC consensus.strict: gcaTATGCgCATAtgc
CC consensus.strict.rc: GCATATGCGCATATGC
CC consensus.IUPAC: gcaTATGCgCATAtgc
CC consensus.IUPAC.rc: GCATATGCGCATATGC
CC consensus.regexp: gcaTATGCgCATAtgc
CC consensus.regexp.rc: GCATATGCGCATATGC
XX
//
AC positions_8nt_m4
XX
ID positions_8nt_m4
XX
DE wrCATGACAAwr
P0 A C G T
1 185 126 95 272
2 174 138 276 90
3 35 616 17 10
4 625 27 14 12
5 24 4 32 618
6 107 57 468 46
7 632 10 24 12
8 19 581 50 28
9 647 14 7 10
10 640 15 15 8
11 220 103 94 261
12 201 102 271 104
XX
CC program: feature
CC matrix.nb: 4
CC matrix.nb: 4
CC sites: 678
CC consensus.strict: tgCATGACAAtg
CC consensus.strict.rc: CATTGTCATGCA
CC consensus.IUPAC: wrCATGACAAwr
CC consensus.IUPAC.rc: YWTTGTCATGYW
CC consensus.regexp: [at][ag]CATGACAA[at][ag]
CC consensus.regexp.rc: [CT][AT]TTGTCATG[CT][AT]
XX
//