.gitignore

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/
*.Rproj

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
/*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# MacOS file
src/.DS_Store


.Ruserdata



# C++ code
/src/*.o
/src/*.dll
/src/*.so
/src/*.a
/src/*/*.o
/src/*/*.dll
/src/*/*.so
/src/*/*.a
/src/*/*.exe
/src/*/AdapterRemoval
/src/*/bowtie2-align-s
/src/*/bowtie2-build-s
/src/*/bowtie2-align-l
/src/*/bowtie2-build-l
/inst/AdapterRemoval
/inst/bowtie2-align-s
/inst/bowtie2-build-s
/inst/bowtie2-align-l
/inst/bowtie2-build-l
/inst/*.exe
.Rproj.user