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Can this be used on nanopure data? #60

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raw937 opened this issue Mar 1, 2022 · 1 comment
Open

Can this be used on nanopure data? #60

raw937 opened this issue Mar 1, 2022 · 1 comment

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@raw937
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raw937 commented Mar 1, 2022

Curious as I am looking for a long read mapper that does global over local.

many thanks,
Rick
@rvaser
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rvaser commented Mar 5, 2022

Hello Richard,
Spoa is a vectorized (SIMD) multiple sequence alignment (MSA) tool with quadratic complexity, hence will need a lot of memory for long sequences. What exactly is your use case?

Best regards,
Robert

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@rvaser @raw937