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Trimming way too slow #12

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safisher opened this issue Nov 18, 2013 · 2 comments
Open

Trimming way too slow #12

safisher opened this issue Nov 18, 2013 · 2 comments

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@safisher
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Need to optimize the trimming script.

@safisher
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Should remove the use of "upper()" and require that all sequences (raw and contaminant) are upper case.

@safisher
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Need more efficient way to do rfind().

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