The fastai deep learning library

This repository contains data indexes from NIST's Genome in a Bottle project.

Long read based human genomic structural variation detection with cuteSV

🎨 ASCII art library for Python

NEW - YOLOv8 🚀 in PyTorch > ONNX > OpenVINO > CoreML > TFLite

Lecture notes/book in progress on computing for conservation genomics

Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata

Pangenome-based genome inference

tools for working with genome variation graphs

Exphormer: Sparse Transformer for Graphs

base-accurate DNA sequence alignments using WFA and mashmap2

alignment to variation graph inducer

A technical report on convolution arithmetic in the context of deep learning

workshop on pggb given at the HPRC annual meeting 2022

Assemblies from HPP Year 1 production

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

Detecting genome structural variants with deep learning in single molecule sequencing

MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.

Classification of White Blood Cells in Peripheral Smear Images

Vision Transformer Cookbook with Tensorflow

Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

unet for image segmentation

Structural Variant Identification Method using Long Reads

A python implementation of the Burrows Wheeler Alignment for DNA sequence matching