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Issues list

bgzf index - last offset? P3: Low priority
#262 opened Aug 27, 2015 by jvolkening wishlist
3
hts_readlines() should check that the lines are textual enhancement
#66 opened Feb 21, 2014 by jmarshall wishlist
User Guide enhancement P3: Low priority
#114 opened Jul 22, 2014 by danielecook
6
Please export function-like macros as functions D2: Moderate P3: Low priority
#122 opened Aug 19, 2014 by bicycle1885
5
Enforcing filter criteria on _all_ samples. enhancement
#126 opened Aug 28, 2014 by arq5x wishlist
4
Using bgz extension instead of gz for bgziped files D3: Easy P3: Low priority
#129 opened Sep 9, 2014 by hguturu
@jrandall
13
potential memory leaks
#138 opened Oct 2, 2014 by domibel
1
CSIv2
#148 opened Nov 13, 2014 by pd3 wishlist
5
bcf_has_filter D3: Easy P3: Low priority question
#186 opened Mar 11, 2015 by atks
7
HTS_IDX_REST does not behave as expected D2: Moderate P3: Low priority
#188 opened Mar 13, 2015 by ekg
1
htslib should implement a more complete URI scheme for irods: D2: Moderate P2: Desirable
#229 opened Jun 25, 2015 by jrandall wishlist
5
maxcnt does not limit read depth at each position
#243 opened Jul 17, 2015 by nhayden
@jkbonfield
7
Interoperability with other BCF implementations
#38 opened Nov 25, 2013 by jmarshall wishlist
vcf/bcf reading has no concept of errors! breaks-ABI D2: Moderate P2: Desirable
#246 opened Jul 21, 2015 by jkbonfield
@jkbonfield
9
INFO field parsing P2: Desirable
#266 opened Sep 9, 2015 by mikecho95
Inappropriate error message
#273 opened Sep 22, 2015 by jkbonfield
@jkbonfield
3
VCF added sample has undefined format fields
#282 opened Oct 1, 2015 by noporpoise
@mp15
2
[tracking] Header Parsing
#293 opened Oct 29, 2015 by SamStudio8
1
Long term tracking issue: consistency of API P3: Low priority
#297 opened Nov 2, 2015 by jkbonfield
2
htslib internals: question about storage of GLs in bcf_fmt_t records question
#302 opened Nov 18, 2015 by winni2k
4
samtools: mpileup -r <regionspec> includes wrong areas bug D2: Moderate P2: Desirable
#306 opened Dec 1, 2015 by jblachly
12
TODO: CRAM split aux tags
#313 opened Jan 14, 2016 by jkbonfield wishlist
@jkbonfield
CRAM lossy name compression and tag white/black list
#314 opened Jan 14, 2016 by jkbonfield wishlist
@jkbonfield
2
Extracting blocks of unaligned reads from CRAM
#316 opened Jan 19, 2016 by schelhorn
6
Lack of seek error checking in multithreaded BGZF files
#1889 opened Feb 15, 2025 by jmarshall
@whitwham
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