diff --git a/.travis.yml b/.travis.yml
index 99bc89b..268f3b1 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -1,12 +1,7 @@
 language: python
-branches:
-  only:
-  - master
 python:
   - "3.7"
 sudo: false
-install:
-  - source ./install_dependencies.sh
 before_script:
   - pip install codecov
 script:
diff --git a/farm_blast/pipeline.py b/farm_blast/pipeline.py
index 5dab4b2..4634437 100644
--- a/farm_blast/pipeline.py
+++ b/farm_blast/pipeline.py
@@ -242,7 +242,7 @@ def _make_combine_script(self, script_name=None):
         if self.test:
             print(self.farm_blast_script, '--test --fix_coords_in_blast_output x x', file=f)
         else:
-            print(self.farm_blast_script, '--fix_coords_in_blast_output x x', file=f)
+            print('farm_blast --fix_coords_in_blast_output x x', file=f)
         print('rm', ' '.join(self.files_to_delete), file=f)
         print('touch FINISHED', file=f)
         f.close()
diff --git a/install_dependencies.sh b/install_dependencies.sh
deleted file mode 100644
index 25b39f0..0000000
--- a/install_dependencies.sh
+++ /dev/null
@@ -1,59 +0,0 @@
-#!/bin/bash
-
-set -x
-set -e
-
-start_dir=$(pwd)
-
-BLAST_VERSION="2.9.0"
-BLAST_DOWNLOAD_FILENAME="ncbi-blast-${BLAST_VERSION}+-x64-linux.tar.gz"
-BLAST_PLUS_URL="ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${BLAST_VERSION}/${BLAST_DOWNLOAD_FILENAME}"
-
-# Make an install location
-if [ ! -d 'build' ]; then
-  mkdir build
-fi
-cd build
-
-# Download blast
-build_dir=$(pwd)
-BLAST_DOWNLOAD_PATH="$(pwd)/${BLAST_DOWNLOAD_FILENAME}"
-
-if [ -e "$BLAST_DOWNLOAD_PATH" ]; then
-  echo "Skipping download of $BLAST_PLUS_URL, $BLAST_DOWNLOAD_PATH already exists"
-else
-  echo "Downloading $BLAST_PLUS_URL to $BLAST_DOWNLOAD_PATH"
-  travis_wait 40 wget $BLAST_PLUS_URL -O $BLAST_DOWNLOAD_PATH
-fi
-
-# Untar blast
-BLAST_BUILD_DIR="$(pwd)/ncbi-blast-${BLAST_VERSION}+"
-
-if [ -d "$BLAST_BUILD_DIR" ]; then
-  echo "Blast already untarred to $BLAST_BUILD_DIR, skipping"
-else
-  echo "Untarring blast to $BLAST_BUILD_DIR"
-  tar xzvf $BLAST_DOWNLOAD_PATH
-fi
-
-cd $BLAST_BUILD_DIR
-
-# Add blast to PATH
-BLAST_BIN_DIR="$(pwd)/bin"
-update_path () {
-  new_dir=$1
-  if [[ ! "$PATH" =~ (^|:)"${new_dir}"(:|$) ]]; then
-    export PATH=${new_dir}:${PATH}
-  fi
-}
-
-export PATH
-update_path $BLAST_BIN_DIR
-
-py_path=$(which python3)
-export PYTHONPATH=$py_path:$PYTHONPATH
-
-cd $start_dir
-
-set +e
-set +x
diff --git a/setup.py b/setup.py
index fce9ec5..cbd917f 100644
--- a/setup.py
+++ b/setup.py
@@ -25,8 +25,7 @@
     print(found, program, sep='\t')
 
 if not found_all_progs:
-    print('Cannot install because some programs from the blast+ package not found.', file=sys.stderr)
-    sys.exit(1)
+    print('Some programs from the blast+ package not found, farm_blast may not work properly.', file=sys.stderr)
 
 
 setup(