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@DLBPointon
DLBPointon committed Nov 26, 2024
1 parent a28e957 commit 88d7423
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Showing 3 changed files with 29 additions and 77 deletions.
2 changes: 1 addition & 1 deletion assets/github_testing/github_test.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -23,4 +23,4 @@ vecscreen_database_path: /home/runner/work/ascc/ascc/vecscreen/
seqkit_sliding: 100000
seqkit_window: 6000
n_neighbours: 13
btk_yaml: /home/runner/work/ascc/ascc/assets/btk_draft.yaml
btk_yaml: /home/runner/work/ascc/ascc/assets/btk_draft.yaml
98 changes: 25 additions & 73 deletions modules.json
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Expand Up @@ -8,151 +8,109 @@
"blast/blastn": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
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"modules"
],
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"patch": "modules/nf-core/blast/makeblastdb/blast-makeblastdb.diff"
},
"custom/getchromsizes": {
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"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": [
"modules"
],
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"patch": "modules/nf-core/custom/getchromsizes/custom-getchromsizes.diff"
},
"diamond/blastx": {
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"fastqc": {
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"multiqc": {
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"ncbitools/vecscreen": {
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"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
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"samtools/depth": {
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"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
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"samtools/faidx": {
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"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
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"samtools/index": {
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"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
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"samtools/merge": {
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"samtools/sort": {
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"samtools/view": {
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"seqkit/sliding": {
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"tiara/tiara": {
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}
}
},
Expand All @@ -161,26 +119,20 @@
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": [
"subworkflows"
]
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},
"utils_nfcore_pipeline": {
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},
"utils_nfvalidation_plugin": {
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"installed_by": [
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]
"installed_by": ["subworkflows"]
}
}
}
}
}
}
}
6 changes: 3 additions & 3 deletions modules/nf-core/custom/getchromsizes/environment.yml
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