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Layer 2 - Kmer Counting + dim reduction #7

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DLBPointon opened this issue Jul 10, 2023 · 2 comments · Fixed by #40
Closed

Layer 2 - Kmer Counting + dim reduction #7

DLBPointon opened this issue Jul 10, 2023 · 2 comments · Fixed by #40
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@DLBPointon
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DLBPointon commented Jul 10, 2023 •
edited by weaglesBio
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Implement Eerik's version and
A future task will be implementing a version using FastK, then compare.
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weaglesBio commented Aug 21, 2023 •
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https://github.com/sanger-tol/cobiontcheck/blob/develop/ascc_get_kmer_counts.py
https://github.com/sanger-tol/cobiontcheck/blob/develop/ascc_dim_reduction.py

@weaglesBio weaglesBio linked a pull request Nov 17, 2023 that will close this issue
Kmer count + Dimensionality reduction #40
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DLBPointon commented Feb 23, 2024 •
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KMER may need to split out so that there is an instance per machine learning method.

EDIT: This is already the case, we implemented this in October

@muffato muffato added this to the Release 1 milestone Jun 17, 2024
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Kmer count + Dimensionality reduction sanger-tol/ascc
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