New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error in eval(predvars, data, env) : object 'log_umi' not found #19

Open

Tycooner opened this issue Dec 8, 2023 · 1 comment

Tycooner commented Dec 8, 2023

when I run the step:
query <- SCTransform(

object = query,
assay = "RNA",
new.assay.name = "refAssay",
residual.features = rownames(x = reference$map),
reference.SCT.model = reference$map[["refAssay"]]@SCTModel.list$refmodel,
method = 'glmGamPoi',
ncells = 2000,
n_genes = 2000,
do.correct.umi = FALSE,
do.scale = FALSE,
do.center = TRUE
)
it occurs the errors: Error in eval(predvars, data, env) : object 'log_umi' not found

what is the reason? i need help!!

FourAlarmFire commented Oct 27, 2024

I also met the issue, did you resolve it ?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment