matlab.yml

name: Matlab (ubuntu) build and test

on: [push]

env:
  MATLAB_VERSION: R2021a
  CC: gcc-9
  CXX: g++-9

jobs:
  build:
    runs-on: ubuntu-latest
    steps:
    - name: Checkout code
      uses: actions/checkout@v4

    - uses: seanmiddleditch/gha-setup-ninja@master

    - name: Set up MATLAB
      uses: matlab-actions/setup-matlab@v2
      # with:
      #   release: ${{ env.MATLAB_VERSION }}

    - name: Install Ubuntu dependencies
      shell: bash
      run: |
        sudo apt-get update
        sudo apt-get install -y check ccache
        git clone https://github.com/libexpat/libexpat
        cmake -G Ninja -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DEXPAT_BUILD_TESTS=OFF -DEXPAT_BUILD_TOOLS=OFF -DEXPAT_BUILD_EXAMPLES=OFF -DEXPAT_SHARED_LIBS=OFF -DCMAKE_INSTALL_PREFIX=./dependencies -B libexpat -S libexpat/expat 
        cmake --build libexpat
        cmake --install libexpat

    - name: Create Build Environment
      run: cmake -E make_directory ${{runner.workspace}}/build

    # - name: Setup tmate session
    #   uses: mxschmitt/action-tmate@v3

    - name: Configure
      shell: bash
      working-directory: ${{runner.workspace}}/build
      run: |
        cmake $GITHUB_WORKSPACE \
        -G "Ninja" \
        -DCMAKE_BUILD_TYPE=Debug \
        -DWITH_CHECK=ON \
        -DWITH_LIBXML=OFF \
        -DWITH_EXPAT=ON \
        -DWITH_MATLAB=ON \
        -DWITH_STABLE_PACKAGES=ON 

    - name: Build
      working-directory: ${{runner.workspace}}/build
      shell: bash
      run: |
        cmake --build . --config Debug --target matlab_binding_TranslateSBML
        cmake --build . --config Debug --target matlab_binding_OutputSBML

    - name: Run Test
      uses: matlab-actions/run-command@v2
      with:
        command: cd('../build/src/bindings/matlab/test'); runTests