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g.bib
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@MISC{gauges:2004,
TITLE = {Including Layout Information in {SBML} Files Version 2.1},
AUTHOR = {Ralph Gauges and Ursula Rost and Sven Sahle and Katja Wegner},
ADDRESS = {European Media Laboratory},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://projects.eml.org/bcb/sbml/level1/level2/20040630/SBMLLayoutExtension-20040630.pdf}.},
YEAR = 2004
}
@BOOK{geist:1994,
AUTHOR = {Al Geist and Adam Beguelin and Jack Dongarra and Weicheng Jiang
and Robert Manchek and Vaidyalingam S. Sunderam},
TITLE = {{PVM}: Parallel Virtual Machine},
PUBLISHER = MITP,
YEAR = 1994,
ADDRESS = CAMMA,
ISBN = {0-262-57108-0}
}
@ARTICLE{gibson:2000,
AUTHOR = {M. Gibson and J. Bruck},
TITLE = {Efficient exact stochastic simulation of chemical
systems with many species and many channels},
JOURNAL = {J. Phys. Chem. A},
YEAR = 2000,
VOLUME = 104,
PAGES = {1876--1889},
}
@ARTICLE{gillespie:1976,
AUTHOR = {D. Gillespie},
TITLE = {A general method for numerically simulating
the stochastic time evolution of coupled chemical reactions},
JOURNAL = {J. Comput. Phys.},
YEAR = 1976,
VOLUME = 22,
PAGES = {403--434},
}
@ARTICLE{gillespie:1977,
AUTHOR = {D. Gillespie},
TITLE = {Exact stochastic simulation of coupled chemical reactions},
JOURNAL = {J. Phys. Chem.},
YEAR = 1977,
VOLUME = 81,
PAGES = {2340--2361},
}
@ARTICLE{gillespie:1992,
AUTHOR = {D. Gillespie},
TITLE = {A rigorous derivation of the chemical master equation},
JOURNAL = {Physica A},
YEAR = 1992,
VOLUME = 188,
PAGES = {404--425},
}
@ARTICLE{gillespie:2000,
AUTHOR = {D. Gillespie},
TITLE = {The chemical Langevin equation},
JOURNAL = {J. Chem. Phys.},
YEAR = 2000,
VOLUME = 113,
PAGES = {297--306},
}
@ARTICLE{gillespie:2001,
AUTHOR = {D. Gillespie},
TITLE = {Approximate accelerated stochastic simulation of chemically
reacting systems},
JOURNAL = {J. Chem. Phys.},
YEAR = 2001,
VOLUME = {In press},
}
@MISC{gilman:2000,
AUTHOR = {A. Gilman},
TITLE = {A Letter to the Signaling Community},
HOWPUBLISHED = {Alliance for Cellular Signaling, The University of Texas
Southwestern Medical Center. Available via the World
Wide Web at
\url{http://afcs.swmed.edu/afcs/Letter_to_community.htm}},
YEAR = 2000
}
@INPROCEEDINGS{ginkel:2000,
AUTHOR = {M. Ginkel and A. Kremling and F. Tr\"{a}nkle and E.~D. Gilles and M. Zeitz},
TITLE = {Application of the process modeling tool {ProMot} to the
modeling of metabolic networks},
BOOKTITLE = {Proceedings of the 3rd MATHMOD},
PAGES = {525--528},
YEAR = 2000,
EDITOR = {I. Troch and F. Breitenecker},
}
@INPROCEEDINGS{ginkel:2002,
AUTHOR = {Martin Ginkel},
TITLE = {{M}odular {SBML} {P}roposal for an {E}xtension of {SBML} towards level 2},
BOOKTITLE = {{P}roceedings of 5th {F}orum on {S}oftware {P}latforms for {S}ystems {B}iology ({SBML} {F}orum)},
YEAR = 2002,
MONTH = {July},
NOTE = {Available via the World Wide Web at
\url{http://www.sbml.org/workshops/fifth/sbml-modular.pdf}}
}
@MISC{go:2004,
AUTHOR = {{Gene Ontology Consortium}},
TITLE = {{GO} File Format Guide - {XML}},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.geneontology.org/GO.format.html#XML}},
YEAR = 2004
}
@article{go:2000,
Author = {{The Gene Ontology Consortium}},
Title = {Gene Ontology: tool for the unification of biology},
Journal = {Nat Genet},
Volume = {25},
Pages = {25-29},
Year = {2000}
}
@ARTICLE{goddard:2001,
AUTHOR = {Nigel~H. Goddard and Michael Hucka and Fred Howell and Hugo
Cornelis and Kavita Shankar and David Beeman},
TITLE = {Towards {NeuroML}: Model Description Methods for
Collaborative Modelling in Neuroscience},
JOURNAL = {Philosophical Transactions of the Royal Society},
YEAR = 2001,
NOTE = {In press}
}
@ARTICLE{goldstein:2001,
AUTHOR = {Byron Goldstein and James~R. Faeder and William~S. Hlavacek and Michael~L. Blinov and Antonio Redondoc and Carla Wofsy},
JOURNAL = {Molecular Immunology},
YEAR = 2001,
VOLUME = 38,
PAGES = {1213-–1219},
TITLE = {Modeling the early signaling events mediated by {Fc$\varepsilon$RI}}
}
@ARTICLE{goryanin:1999,
AUTHOR = {I. Goryanin and T.~C. Hodgman and E. Selkov},
TITLE = {Mathematical Simulation and Analysis of Cellular
Metabolism and Regulation},
JOURNAL = BI,
YEAR = 1999,
VOLUME = 15,
NUMBER = 9,
PAGES = {749--758}
}
@MISC{goryanin:2001,
AUTHOR = {I. Goryanin},
TITLE = {\emph{DBsolve}: Software for Metabolic, Enzymatic and
Receptor-Ligand Binding Simulation},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://homepage.ntlworld.com/igor.goryanin/}},
YEAR = 2001
}
@MISC{grace:1999,
AUTHOR = {{Grace Software}},
TITLE = {JavaLog},
HOWPUBLISHED = {Available via the World Wide Web at
\url{http://www.homestead.com/javalog/}.},
YEAR = 1999
}
@BOOK{gropp:1999,
AUTHOR = {William Gropp and Ewing Lusk and Anthony Skjellum},
TITLE = {Using {MPI}: Portable Parallel Programming with
the {Message Passing Interface}},
PUBLISHER = MITP,
YEAR = "1999"
}
@ARTICLE{gurdon:1988,
AUTHOR = {J.~B. Gurdon},
TITLE = {A community effect in animal development},
JOURNAL = NAT,
YEAR = 1988,
VOLUME = 336,
NUMBER = 6201,
PAGES = {772-774}
}