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4dnucleome.yaml
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4dnucleome.yaml
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Name: 4D Nucleome (4DN)
Description: |
The goal of the National Institutes of Health (NIH) Common Fund’s 4D Nucleome (4DN) program
is to study the three-dimensional organization of the nucleus in space and time (the 4th dimension).
The nucleus of a cell contains DNA, the genetic “blueprint” that encodes all of the genes a living
organism uses to produce proteins needed to carry out life-sustaining cellular functions. Understanding
the conformation of the nuclear DNA and how it is maintained or changes in response to environmental
and cellular cues over time will provide insights into basic biology as well as aspects of human
health and disease. The 4DN is an international consortium of researchers who generate data that
include results from a variety of genomics and imaging assays with a focus on, but not exclusive to,
those that demonstrate close contact between chromatin loci that are non-adjacent on the linear DNA
sequence of chromosomes. Additional assays probe the nuclear landscape in the context of interactions
of chromatin with specific proteins, RNAs and epigenetic changes.
Contact: [email protected]
ManagedBy: 4DN Data Coordination and Integration Center (4DN-DCIC)
Documentation: https://data.4dnucleome.org
UpdateFrequency: Daily
Tags:
- biology
- bioinformatics
- genetic
- genomic
- imaging
- life sciences
- aws-pds
License: External data users may freely download, analyze, and publish results based on any 4DN data provided here without restrictions.
Resources:
- Description: Released and archived 4DNucleome data
ARN: arn:aws:s3:::4dn-open-data-public
Region: us-east-1
Type: S3 Bucket
DataAtWork:
Tutorials:
- Title: Finding and Downloading 4DN Data files
URL: https://data.4dnucleome.org/help/user-guide/downloading-files
AuthorName: 4DN-DCIC
AuthorURL: data.4dnucleome.org
- Title: Using jupyterhub on the 4DN data portal
URL: https://data.4dnucleome.org/tools/jupyterhub
AuthorName: 4DN-DCIC
AuthorURL: data.4dnucleome.org