This is a plugin for scipion wrapping some algorithms developed by Professor Emil Alexov Group.
These tools will make it possible to carry out different functions for computational modeling of biological macromolecules and their assemblages as well as predicting biophysical quantities associated with them (e.g: prediction of the binding free energy change (ΔΔG) for protein-protein interactions).
Therefore, this plugin allows to use programs from the SAAMBE-3D software suite within the Scipion framework.
You will need to use Scipion3 to run these protocols.
- Install the plugin in Scipion
External software SAAMBE-3D is installed automatically by Scipion.
Install the stable version (Not available yet)
Through the plugin manager GUI by launching Scipion and following Configuration >> Plugins
or by running command:
scipion3 installp -p scipion-chem-alexov
Developer's version
- Download repository:
git clone https://github.com/scipion-chem/scipion-chem-alexov.git
- Install:
scipion3 installp -p path_to_scipion-chem-alexov --devel