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Include dataset id in visium HD reader #278

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merged 2 commits into from
Feb 23, 2025
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grst
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@grst grst commented Feb 17, 2025

Follow up of #266, adapting the changes also for visium HD.

More generally, should a dataset_id be included in any format read with spatialdata-io? It seems inconsistent to do name slots by sample in some, but not in other cases.

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  • changed: Visium HD coordinate system names use the dataset_id prefix (and dataset_id is used instead of global). This makes it easier to concatenate multiple samples. Tip: tou can call sdata.rename_coordinate_systems() if you want to restore the legacy names.

@grst grst requested a review from LucaMarconato February 17, 2025 14:03
@LucaMarconato
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Thanks, yes at some point we can do a cleanup and work on improving the cross-tech naming. This is a good start.

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Thanks!

@LucaMarconato LucaMarconato merged commit 1b314d8 into main Feb 23, 2025
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@LucaMarconato LucaMarconato deleted the coord-system-names branch February 23, 2025 22:53
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