chown user permission error when running example

[oliverfanderson]

Hello!

We (@ctrlaltaf) are excited to run DeRegNet. We are having some trouble running the test example. We think it is because some file permissions need to be changed in the Docker image using chown, but we do not have the proper permissions. We are running from MacOS and running the example command in the README.md. The error is below and the full log is attached. Any help is appreciated.

Thanks!

Traceback (most recent call last):
  File "/deregnet/python/scripts/avgdrgnt.py", line 69, in <module>
    main()
  File "/deregnet/python/scripts/avgdrgnt.py", line 63, in main
    results = finder.run(deregnet_args)
  File "/usr/local/lib/python3.7/dist-packages/deregnet/core.py", line 566, in run
    return self.run_average_deregnet(**(args()))
  File "/usr/local/lib/python3.7/dist-packages/deregnet/core.py", line 717, in run_average_deregnet
    node_names_list = self._read_result(rundir)
  File "/usr/local/lib/python3.7/dist-packages/deregnet/core.py", line 873, in _read_result
    for sif in os.listdir(output):
FileNotFoundError: [Errno 2] No such file or directory: '/home/aoliver/.deregnet/tmp/2023-08-30-21-06-13/run_2023-08-30-21-06-14/plain'
chmod: missing operand after '/io'
Try 'chmod --help' for more information.
chown: changing ownership of '/io/.git/objects/pack/pack-6358129a07374c43cf278c30e5490dee95952c54.idx': Permission denied
chown: changing ownership of '/io/.git/objects/pack/pack-6358129a07374c43cf278c30e5490dee95952c54.pack': Permission denied

deregnet_issue.txt