test.yml

name: Testing

# Run this workflow every time a new commit pushed to your repository
on: push

jobs:
  tester:
    name: Test the code
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.8]

    steps:
      - name: Checkout 
        uses: actions/checkout@v4
      - name: Python setup
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          architecture: 'x64'
          cache: 'pip'
      - name: Dependencies
        run: |
          python -m pip install --upgrade pip
          pip install -r requirements.txt
          pip install pytest
          pip install pytest-cov
          pip install coveralls
          pip install scikit-learn torch
          pip install wheel
          pip install .
          pip install pytz numba healpy speclite fitsio photutils==1.6.0
          pip install git+https://github.com/desihub/desiutil@3.2.2
          pip install  --no-build-isolation git+https://github.com/desihub/desitarget@2.7.0
        # for desitarget
      - name: Fetching data
        run: |
          cd tests
          mkdir templ_data
          wget -q https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/small_phoenix.tar.gz
          tar xfz small_phoenix.tar.gz
          mkdir templ_data_desi
          cd templ_data_desi/
          wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/templ_data_desi/
          cd ..
          mkdir templ_data_sdss
          cd templ_data_sdss/
          wget -q -r -np -nd https://people.ast.cam.ac.uk/~koposov/files/rvspecfit_files/v2411/templ_data_sdss/
          cd ../data/
          wget -q https://data.desi.lbl.gov/public/edr/spectro/redux/fuji/healpix/sv1/bright/103/10378/coadd-sv1-bright-10378.fits
          wget -q https://data.desi.lbl.gov/public/edr/spectro/redux/fuji/healpix/sv1/bright/103/10378/redrock-sv1-bright-10378.fits
          cd ../../
      - name: EnvVar
        run: |
          echo "RVS_NN_DEVICE=cpu" >> "$GITHUB_ENV"
      - name: Testing
        run: |
          pytest --cov=rvspecfit
      - name: Coveralls
        if: ${{ success() }}
        run: coveralls --service=github
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}