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Issues: seqan/seqan3

3.4.0 Release
#3325 opened Jan 22, 2025 by eseiler
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Issues list

[Alignment] Is there a way to run align_pairwise without traceback? question a user question how to do certain things
#3045 opened Aug 12, 2022 by leannmlindsey
3
[Alignment] Multiple Sequence Alignment (MSA) and Alignment Graph feature/proposal a new feature or an idea of
#1763 opened Apr 24, 2020 by cartoonist
10
[Infra] Python bindings feature/proposal a new feature or an idea of
#2232 opened Nov 2, 2020 by BjornFJohansson
1
[IO] Is there a neat way to pass only selected fields to SAM output? documentation documentation is missing to close this issue question a user question how to do certain things ready to tackle Fully specified, discussed and understood. Can be tackled.
#2436 opened Mar 9, 2021 by tloka
@smehringer
4
[Alphabet] Alphabet types can no longer be constructed using their rank documentation documentation is missing to close this issue ready to tackle Fully specified, discussed and understood. Can be tackled.
#2745 opened Jun 9, 2021 by tloka
12
[Search] Shapes are the wrong way around question a user question how to do certain things
#2832 opened Sep 24, 2021 by MitraDarja
@eseiler
8
[IO] Parsing for genome alignment formats (MAF and HAL) feature/proposal a new feature or an idea of
#2903 opened Nov 25, 2021 by bkille
6
[Search] XOR Filters feature/proposal a new feature or an idea of
#2925 opened Jan 7, 2022 by JensUweUlrich
11
[IO] Access list of file extensions of seqan3 I/O input classes feature/proposal a new feature or an idea of
#2927 opened Jan 10, 2022 by Irallia
1
[Search] Query the text size feature/proposal a new feature or an idea of
#2934 opened Jan 26, 2022 by joergi-w
1
[Alphabet] seqan3::concatenated_sequences benchmark ready to tackle Fully specified, discussed and understood. Can be tackled.
#2951 opened Mar 21, 2022 by smehringer
7 tasks
@MitraDarja
7
[IO] VCF/BCF support question a user question how to do certain things
#2953 opened Mar 26, 2022 by cauliyang
2
[Alignment] Meta-issue
#314 opened Aug 1, 2018 by rrahn
29 of 39 tasks
@marehr @rrahn
7
[IO] BAM index support feature/proposal a new feature or an idea of
#2985 opened May 21, 2022 by jay-tux
6
Use OS/system packaged sdsl library question a user question how to do certain things
#3162 opened Jul 2, 2023 by kbipinkumar
10
Tests fail to compile bug faulty or wrong behaviour of code response needed stalled since more user information is needed
#3191 opened Sep 10, 2023 by yurivict
2 tasks done
2
several same-score pairwise alignments question a user question how to do certain things
#3198 opened Oct 11, 2023 by notestaff
6
alignment slice positions question a user question how to do certain things
#3203 opened Nov 1, 2023 by notestaff
1
output_sequence1_id and output_sequence2_id are same bug faulty or wrong behaviour of code
#3205 opened Nov 8, 2023 by JappyPing
@rrahn
4
Convert vertor<dna5> to std:string question a user question how to do certain things
#3218 opened Dec 17, 2023 by nhhaidee
1
creating SAM file headers documentation documentation is missing to close this issue feature/proposal a new feature or an idea of
#3235 opened Feb 16, 2024 by notestaff
1
single-thread mode feature/proposal a new feature or an idea of question a user question how to do certain things
#3239 opened Feb 23, 2024 by notestaff
4
appending records to a .bam question a user question how to do certain things
#3250 opened Mar 5, 2024 by notestaff
1
Multi-threading, banding, other speed-ups question a user question how to do certain things
#3255 opened May 19, 2024 by jaysunl
3
Running sequence alignment with alphabets with more than 256 characters question a user question how to do certain things
#3341 opened Feb 19, 2025 by andrestiraboschieclypsium
1
3
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