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Running sequence alignment with alphabets with more than 256 characters
question
a user question how to do certain things
#3341
opened Feb 19, 2025 by
andrestiraboschieclypsium
updated Feb 20, 2025
Alignment pretty printing issues
documentation
documentation is missing to close this issue
#3309
opened Nov 26, 2024 by
feldroop
updated Nov 27, 2024
2 tasks done
Problem with installation on mac os x
question
a user question how to do certain things
#3286
opened Sep 6, 2024 by
mkazanov
updated Sep 19, 2024
Improve SAM tag handling
feature/proposal
a new feature or an idea of
#3283
opened Aug 12, 2024 by
eseiler
updated Aug 12, 2024
Score prealigned sequences
question
a user question how to do certain things
#3282
opened Aug 9, 2024 by
tkramer-motion
updated Aug 9, 2024
several same-score pairwise alignments
question
a user question how to do certain things
#3198
opened Oct 11, 2023 by
notestaff
updated Jun 4, 2024
Multi-threading, banding, other speed-ups
question
a user question how to do certain things
#3255
opened May 19, 2024 by
jaysunl
updated May 21, 2024
single-thread mode
feature/proposal
a new feature or an idea of
question
a user question how to do certain things
#3239
opened Feb 23, 2024 by
notestaff
updated May 8, 2024
appending records to a .bam
question
a user question how to do certain things
#3250
opened Mar 5, 2024 by
notestaff
updated Mar 14, 2024
creating SAM file headers
documentation
documentation is missing to close this issue
feature/proposal
a new feature or an idea of
#3235
opened Feb 16, 2024 by
notestaff
updated Feb 21, 2024
Convert vertor<dna5> to std:string
question
a user question how to do certain things
#3218
opened Dec 17, 2023 by
nhhaidee
updated Dec 19, 2023
output_sequence1_id and output_sequence2_id are same
bug
faulty or wrong behaviour of code
#3205
opened Nov 8, 2023 by
JappyPing
updated Nov 9, 2023
alignment slice positions
question
a user question how to do certain things
#3203
opened Nov 1, 2023 by
notestaff
updated Nov 2, 2023
Tests fail to compile
bug
faulty or wrong behaviour of code
response needed
stalled since more user information is needed
#3191
opened Sep 10, 2023 by
yurivict
updated Sep 12, 2023
2 tasks done
Use OS/system packaged sdsl library
question
a user question how to do certain things
#3162
opened Jul 2, 2023 by
kbipinkumar
updated Jul 15, 2023
[IO] BAM index support
feature/proposal
a new feature or an idea of
#2985
opened May 21, 2022 by
jay-tux
updated Dec 7, 2022
[Alignment] Is there a way to run align_pairwise without traceback?
question
a user question how to do certain things
#3045
opened Aug 12, 2022 by
leannmlindsey
updated Nov 17, 2022
[Alphabet] Alphabet types can no longer be constructed using their rank
documentation
documentation is missing to close this issue
ready to tackle
Fully specified, discussed and understood. Can be tackled.
#2745
opened Jun 9, 2021 by
tloka
updated Oct 20, 2022
[Search] Shapes are the wrong way around
question
a user question how to do certain things
#2832
opened Sep 24, 2021 by
MitraDarja
updated Oct 20, 2022
[IO] VCF/BCF support
question
a user question how to do certain things
#2953
opened Mar 26, 2022 by
cauliyang
updated Oct 20, 2022
[Alphabet] seqan3::concatenated_sequences benchmark
ready to tackle
Fully specified, discussed and understood. Can be tackled.
#2951
opened Mar 21, 2022 by
smehringer
updated Oct 20, 2022
7 tasks
[Search] Query the text size
feature/proposal
a new feature or an idea of
#2934
opened Jan 26, 2022 by
joergi-w
updated Oct 20, 2022
[IO] Access list of file extensions of seqan3 I/O input classes
feature/proposal
a new feature or an idea of
#2927
opened Jan 10, 2022 by
Irallia
updated Oct 20, 2022
[Search] XOR Filters
feature/proposal
a new feature or an idea of
#2925
opened Jan 7, 2022 by
JensUweUlrich
updated Oct 20, 2022
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