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Issues: seqan/seqan3

3.4.0 Release
#3325 opened Jan 22, 2025 by eseiler
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Issues list

Running sequence alignment with alphabets with more than 256 characters question a user question how to do certain things
#3341 opened Feb 19, 2025 by andrestiraboschieclypsium updated Feb 20, 2025
1
3
3.4.0 Release
#3325 opened Jan 22, 2025 by eseiler updated Jan 23, 2025
7 of 29 tasks
Alignment pretty printing issues documentation documentation is missing to close this issue
#3309 opened Nov 26, 2024 by feldroop updated Nov 27, 2024
2 tasks done
3
Problem with installation on mac os x question a user question how to do certain things
#3286 opened Sep 6, 2024 by mkazanov updated Sep 19, 2024
@eseiler
5
Improve SAM tag handling feature/proposal a new feature or an idea of
#3283 opened Aug 12, 2024 by eseiler updated Aug 12, 2024
Score prealigned sequences question a user question how to do certain things
#3282 opened Aug 9, 2024 by tkramer-motion updated Aug 9, 2024
several same-score pairwise alignments question a user question how to do certain things
#3198 opened Oct 11, 2023 by notestaff updated Jun 4, 2024
6
Multi-threading, banding, other speed-ups question a user question how to do certain things
#3255 opened May 19, 2024 by jaysunl updated May 21, 2024
3
single-thread mode feature/proposal a new feature or an idea of question a user question how to do certain things
#3239 opened Feb 23, 2024 by notestaff updated May 8, 2024
4
appending records to a .bam question a user question how to do certain things
#3250 opened Mar 5, 2024 by notestaff updated Mar 14, 2024
1
creating SAM file headers documentation documentation is missing to close this issue feature/proposal a new feature or an idea of
#3235 opened Feb 16, 2024 by notestaff updated Feb 21, 2024
1
Convert vertor<dna5> to std:string question a user question how to do certain things
#3218 opened Dec 17, 2023 by nhhaidee updated Dec 19, 2023
1
output_sequence1_id and output_sequence2_id are same bug faulty or wrong behaviour of code
#3205 opened Nov 8, 2023 by JappyPing updated Nov 9, 2023
@rrahn
4
alignment slice positions question a user question how to do certain things
#3203 opened Nov 1, 2023 by notestaff updated Nov 2, 2023
1
Tests fail to compile bug faulty or wrong behaviour of code response needed stalled since more user information is needed
#3191 opened Sep 10, 2023 by yurivict updated Sep 12, 2023
2 tasks done
2
Use OS/system packaged sdsl library question a user question how to do certain things
#3162 opened Jul 2, 2023 by kbipinkumar updated Jul 15, 2023
10
[IO] BAM index support feature/proposal a new feature or an idea of
#2985 opened May 21, 2022 by jay-tux updated Dec 7, 2022
6
[Alignment] Is there a way to run align_pairwise without traceback? question a user question how to do certain things
#3045 opened Aug 12, 2022 by leannmlindsey updated Nov 17, 2022
3
[Alphabet] Alphabet types can no longer be constructed using their rank documentation documentation is missing to close this issue ready to tackle Fully specified, discussed and understood. Can be tackled.
#2745 opened Jun 9, 2021 by tloka updated Oct 20, 2022
12
[Search] Shapes are the wrong way around question a user question how to do certain things
#2832 opened Sep 24, 2021 by MitraDarja updated Oct 20, 2022
@eseiler
8
[IO] VCF/BCF support question a user question how to do certain things
#2953 opened Mar 26, 2022 by cauliyang updated Oct 20, 2022
2
[Alphabet] seqan3::concatenated_sequences benchmark ready to tackle Fully specified, discussed and understood. Can be tackled.
#2951 opened Mar 21, 2022 by smehringer updated Oct 20, 2022
7 tasks
@MitraDarja
7
[Search] Query the text size feature/proposal a new feature or an idea of
#2934 opened Jan 26, 2022 by joergi-w updated Oct 20, 2022
1
[IO] Access list of file extensions of seqan3 I/O input classes feature/proposal a new feature or an idea of
#2927 opened Jan 10, 2022 by Irallia updated Oct 20, 2022
1
[Search] XOR Filters feature/proposal a new feature or an idea of
#2925 opened Jan 7, 2022 by JensUweUlrich updated Oct 20, 2022
11
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