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Recognition of RBP binding motifs

  • eCLIP : get overlaps between eCLIP peaks and 3'UTRs
  • mobility : compute mobility for all 5-mers in the test set
  • split_data.ipynb : split 3'UTRs into train (75%) and test (25%) sequences. Mobility analysis is performed on test sequences only
  • plot_odds.ipynb : plot the mobility distribution and odds ratios for different mobility groups