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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(antibody_model_biphasic)
export(antibody_model_biphasic_cpp)
export(antibody_model_biphasic_cross_reactivity)
export(antibody_model_monophasic)
export(antibody_model_monophasic_cpp)
export(antibody_model_monophasic_cross_reactivity)
export(antibody_model_typhoid)
export(biomarker_protection)
export(convert_indices_matrix_to_vector)
export(draw_parameters_fixed_fx)
export(draw_parameters_fixed_fx_biomarker_dep)
export(draw_parameters_random_fx)
export(draw_parameters_random_fx_biomarker_dep)
export(exposure_model_dem_mod)
export(exposure_model_fixed)
export(exposure_model_gaussian_process)
export(exposure_model_indiv_fixed)
export(exposure_model_simple_FOE)
export(exposure_model_sir)
export(generate_pop_demography)
export(immunity_model_all_successful)
export(immunity_model_ifxn_biomarker_prot)
export(immunity_model_vacc_ifxn_biomarker_prot)
export(immunity_model_vacc_ifxn_simple)
export(immunity_model_vacc_only)
export(normal_to_lognormal_mean)
export(normal_to_lognormal_sd)
export(observation_model_continuous)
export(observation_model_continuous_bounded)
export(observation_model_continuous_bounded_noise)
export(observation_model_continuous_noise)
export(observation_model_discrete)
export(observation_model_discrete_noise)
export(plot_antibody_model)
export(plot_biomarker_dependent_boosting)
export(plot_biomarker_mediated_protection)
export(plot_biomarker_quantity)
export(plot_exposure_force)
export(plot_exposure_model)
export(plot_exposure_prob)
export(plot_immune_histories)
export(plot_obs_biomarkers_one_sample)
export(plot_obs_biomarkers_paired_sample)
export(plot_subset_individuals_history)
export(precomputation_checks)
export(reformat_biomarker_map)
export(runserosim)
export(simulate_birth_times)
export(simulate_gaussian_process)
export(simulate_removal_times)
export(update)
importFrom(abind,abind)
importFrom(data.table,data.table)
importFrom(deSolve,ode)
importFrom(doParallel,registerDoParallel)
importFrom(dplyr,"%>%")
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,tibble)
importFrom(dplyr,ungroup)
importFrom(foreach,'%dopar%')
importFrom(foreach,foreach)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_hue)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_color_viridis_d)
importFrom(ggplot2,scale_colour_discrete)
importFrom(ggplot2,scale_fill_viridis_c)
importFrom(ggplot2,scale_fill_viridis_d)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(reshape2,melt)
importFrom(stats,complete.cases)
importFrom(stats,rlnorm)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(tidyr,drop_na)
importFrom(tidyr,expand_grid)
useDynLib(serosim, .registration = TRUE)