index.json

{"project": "sgkit", "project_url": "https://sgkit-dev.github.io/sgkit/", "show_commit_url": "http://github.com/sgkit-dev/sgkit/commit/", "hash_length": 8, "revision_to_hash": {"402": "712f2cf1e5bba0812bf5990eafc61a3d570e940f", "540": "da81a168f1feafb3504a7616669d49645d002b71", "665": "119c0b93c4ec4fa6ad3c7d7a3b4c943761fca6f9", "667": "6790d9526178fa22494d1a0cb78d5d709ff5849b", "715": "5d58d09f22f023c866e6b252662f84f83302eb61", "831": "4169d9a37eb7974ee2ff38e08f60002ee6f95f52", "877": "93af9a26f372c9136694b85727b7f540129f193d", "880": "ce34ca1151e8613ae8f6a53f0718105aa1c486b3", "882": "ff976c5f6471dd7fe9ba264583e6ace3faffbc13", "886": "abba58d8a5bde14753cec0f7a6775730ed458b3d", "888": "6cd416ae47c6eab9004217a223904ae4e625e6f5", "892": "8073eeede1c61ff2c6566dcdd586cd1fc77baca2", "894": "1670d344a9d892680c059ff5ebcfb79add3ba506", "897": "4fb05a85200252c8856c8787c22309d5f3024fa7", "901": "486bbb0c1f85f158a1ccbcb7b3b11d4a0b73e4f9", "903": "6cf0ccbaa2b439f4808d81885ed2bac5eb9ef17a", "907": 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"3.8", "3.9"], "branch": ["HEAD"]}, "graph_param_list": [{"machine": "github-actions", "python": "3.9", "branch": "HEAD"}, {"machine": "github-actions", "python": "3.8", "branch": "HEAD"}, {"machine": "github-actions", "python": "3.10", "branch": "HEAD"}], "benchmarks": {"benchmarks_plink.PlinkSpeedSuite.track_write_plink_speed": {"code": "class PlinkSpeedSuite:\n    def track_write_plink_speed(self) -> None:\n        # throw away first run due to numba jit compilation\n        for _ in range(2):\n            duration = _time_func(write_plink, self.ds, path=self.output_plink)\n        return _to_mb_per_s(get_dir_size(self.dir), duration)\n\n    def setup(self) -> None:\n        self.ds = simulate_genotype_call_dataset(\n            n_variant=1000000, n_sample=1000, seed=0\n        )\n    \n        self.dir = Path(tempfile.mkdtemp())\n        self.output_plink = self.dir / \"plink_out\"", "name": "benchmarks_plink.PlinkSpeedSuite.track_write_plink_speed", "param_names": [], "params": [], "type": "track", "unit": "unit", "version": "bd0a5d65a483fcc3805fe0397ded0bd7a60b220a9121a1e2fa2fccd2b4dcf304"}, "benchmarks_stats.TimeSuite.time_count_call_alleles": {"code": "class TimeSuite:\n    def time_count_call_alleles(self) -> None:\n        count_call_alleles(self.count_call_alleles_ds)\n\n    def setup(self) -> None:\n        self.count_call_alleles_ds = simulate_genotype_call_dataset(\n            n_variant=100_000, n_sample=1000\n        )\n        self.count_cohort_alleles_ds = simulate_genotype_call_dataset(\n            n_variant=100_000, n_sample=1000\n        )\n        sample_cohort = np.repeat(\n            [0, 1], self.count_cohort_alleles_ds.dims[\"samples\"] // 2\n        )\n        self.count_cohort_alleles_ds[\"sample_cohort\"] = xr.DataArray(\n            sample_cohort, dims=\"samples\"\n        )", "min_run_count": 2, "name": "benchmarks_stats.TimeSuite.time_count_call_alleles", "number": 0, "param_names": [], "params": [], "repeat": 0, "rounds": 2, "sample_time": 0.01, "type": "time", "unit": "seconds", "version": "99097810ae6b766dfae46c4f296762848ccf073c2fd2f01204786c3957ae8c42", "warmup_time": -1}, "benchmarks_stats.TimeSuite.time_count_cohort_alleles": {"code": "class TimeSuite:\n    def time_count_cohort_alleles(self) -> None:\n        count_cohort_alleles(self.count_cohort_alleles_ds)\n\n    def setup(self) -> None:\n        self.count_call_alleles_ds = simulate_genotype_call_dataset(\n            n_variant=100_000, n_sample=1000\n        )\n        self.count_cohort_alleles_ds = simulate_genotype_call_dataset(\n            n_variant=100_000, n_sample=1000\n        )\n        sample_cohort = np.repeat(\n            [0, 1], self.count_cohort_alleles_ds.dims[\"samples\"] // 2\n        )\n        self.count_cohort_alleles_ds[\"sample_cohort\"] = xr.DataArray(\n            sample_cohort, dims=\"samples\"\n        )", "min_run_count": 2, "name": "benchmarks_stats.TimeSuite.time_count_cohort_alleles", "number": 0, "param_names": [], "params": [], "repeat": 0, "rounds": 2, "sample_time": 0.01, "type": "time", "unit": "seconds", "version": "fb11db6a5b627835f0a682aa2ce1c793f9156522529ddfde2938933cc2278ff3", "warmup_time": -1}}, "machines": {"github-actions": {"machine": "github-actions", "version": 1}}, "tags": {"0.1.0a1": 402, "0.2.0a1": 540, "0.3.0a1": 665, "0.3.0a2": 667, "0.3.0": 715, "0.4.0": 831, "0.5.0": 888, "0.6.0": 1098, "0.7.0": 1199, "0.8.0": 1288, "0.9.0": 1306}, "pages": [["", "Grid view", "Display as a agrid"], ["summarylist", "List view", "Display as a list"], ["regressions", "Show regressions", "Display information about recent regressions"]]}