From 07e75c20b9b8a4d18ea85d830e4911156aecd0bf Mon Sep 17 00:00:00 2001 From: Tim Millar Date: Thu, 15 Jun 2023 14:19:27 +1200 Subject: [PATCH] Update links to validation data --- validation/gwas/method/pc_relate/README.md | 8 +++----- validation/gwas/method/pc_relate/run.sh | 3 +-- 2 files changed, 4 insertions(+), 7 deletions(-) diff --git a/validation/gwas/method/pc_relate/README.md b/validation/gwas/method/pc_relate/README.md index 9ff1319ae..ff46b7745 100644 --- a/validation/gwas/method/pc_relate/README.md +++ b/validation/gwas/method/pc_relate/README.md @@ -5,13 +5,11 @@ HapMap data. This code is scheduled as part of the Github Actions CI. To run manually, you need to first download the test data -from `gs://sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip`, -keep in mind that `sgkit-data` GCS bucket uses -[Requester Pays config](https://cloud.google.com/storage/docs/requester-pays), -and the file size is about 32MB. +from `https://storage.googleapis.com/sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip`, +the file size is about 32MB. ```bash -gsutil -u $BILLING_PROJECT cp gs://sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip /tmp/ +wget https://storage.googleapis.com/sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip -P /tmp/ ./run.sh /tmp/hapmap_JPT_CHB_r23a_filtered.zip ``` diff --git a/validation/gwas/method/pc_relate/run.sh b/validation/gwas/method/pc_relate/run.sh index 6e384cc55..1d2ad7439 100755 --- a/validation/gwas/method/pc_relate/run.sh +++ b/validation/gwas/method/pc_relate/run.sh @@ -10,8 +10,7 @@ TEST_DATA="$1" if [[ -z "$TEST_DATA" ]]; then echo "usage $0 " >&2 - echo "You can download real test data from gs://sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip" >&2 - echo "sgkit-data GCS bucket uses Requester Pays config: https://cloud.google.com/storage/docs/requester-pays" >&2 + echo "You can download real test data from https://storage.googleapis.com/sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip" >&2 exit 1 fi